Locus 5424

Sequence ID 3L_DroMel_CAF1
Location 14,864,727 – 14,864,823
Length 96
Max. P 0.980426
window8587

overview

Window 7

Location 14,864,727 – 14,864,823
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 93.44
Mean single sequence MFE -30.72
Consensus MFE -28.58
Energy contribution -27.90
Covariance contribution -0.68
Combinations/Pair 1.25
Mean z-score -1.58
Structure conservation index 0.93
SVM decision value 1.86
SVM RNA-class probability 0.980426
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14864727 96 - 23771897
CAUCUUGCCCUCGUUUUGGAUUAGAUUCCAGCAUCACUGGGUAAAAAGGUACCUGCCAUAAUGAGCUCUUUCAAUGCCCCAGAGAGCGGGUGGGAC
..(((..(((......((((......))))((.((.(((((......(((....)))....((((....))))....))))).)))))))..))). ( -31.80)
>DroSec_CAF1 46812 96 - 1
CAUCUUGCCCUCGUUUUGGAUUAGAUUCCAGCAUCACUGGGUGAAAAGGUACCUGCCAUAAUGAGCUCUUUCAAUGGCCCAGAGAGCGGGUGAGUC
...((..(((......((((......))))((.((.((((((.(...(((....)))....((((....)))).).)))))).)))))))..)).. ( -32.40)
>DroSim_CAF1 42021 96 - 1
CAUCUUGCCCUCGUUUUGGAUUAGAUUCCAGCAUCACUAGGUGAAAAGGUACCUGCCAUAAUGAGCUCUUUCAAUGCCCCAGAGAGCGGGUGGGCC
...((..((((((((.(((....(((......)))..((((((......))))))))).)))))(((((((.........))))))))))..)).. ( -29.30)
>DroEre_CAF1 42993 96 - 1
CAUCUUGCCCUCGUUUUGGAUUAGAUUCCAGCAUCACUGGGCAAAAAGGUACCCGCCAUAAUGAGCUCUUUCAAUGCCCCGAAGAGCGGGUGGCUC
....((((((..((.(((((......))))).))....))))))..((.(((((..(.....).(((((((.........)))))))))))).)). ( -29.80)
>DroYak_CAF1 38420 94 - 1
CAUCUUGCCCUCGUUUUGGAUUAGAUCCCAGCAUCACUGGGUAAAAAGGUACCCGCCAUAAUGAGCUCUUUCAAUGCCCCAGAGGGCGGGUGGC--
(((((.((((((((.(((((..((..(((((.....)))))......(((....)))........))..))))).))....)))))))))))..-- ( -30.30)
>consensus
CAUCUUGCCCUCGUUUUGGAUUAGAUUCCAGCAUCACUGGGUAAAAAGGUACCUGCCAUAAUGAGCUCUUUCAAUGCCCCAGAGAGCGGGUGGGUC
...((..((((((((.(((....(((......)))...(((((......))))).))).)))))(((((((.........))))))))))..)).. (-28.58 = -27.90 +  -0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:03 2006