| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,850,970 – 14,851,065 |
| Length | 95 |
| Max. P | 0.553044 |
| Location | 14,850,970 – 14,851,065 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 78.65 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -13.40 |
| Energy contribution | -14.26 |
| Covariance contribution | 0.85 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.553044 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14850970 95 + 23771897 UGCUAAUUAUAUAAUUUACAG----CAGCAUAUGCUUCCAGUUAGUAGUGCUGUAAAUAUGAGGCAUUA-AUGCGAAUAUAUGUGGCGCCCGC----UUGGUGG--- .((((..(((((.((((((((----((.....((((.......)))).)))))))))).....(((...-.)))..)))))..))))..((((----...))))--- ( -23.20) >DroSec_CAF1 27431 95 + 1 UGCUAAUUAUAUAAUUUACAA----CAGCAUAUGCUUCGCGUUAAUAGUGCUGUAAAUAUGAGGCAUUA-AUGCGAAUAUAUGUGGCGCCCGC----UGGGUGG--- .....................----..(((((((.(((((((((...(((((..........)))))))-))))))))))))))..(((((..----.))))).--- ( -26.70) >DroSim_CAF1 28022 95 + 1 UGCUAAUUAUAUAAUUUACAA----CAGCAUAUGCUUCGCGUUAAAAGUGCUGUAAAUAUGAGGCAUUA-AUGCGAAUAUAUGUGGCGCCCGC----UGGGUGG--- .....................----..(((((((.(((((((((...(((((..........)))))))-))))))))))))))..(((((..----.))))).--- ( -26.70) >DroEre_CAF1 29562 81 + 1 UGCUAAUUAUAUAAUUUACAG----CAGCAUAUGCUCC-CCUUAAUAGUGCUGUAAAUAUGAGGCAUUA-AUGGGGAUAUAUGUGGC-------------------- ....................(----(.(((((((.(((-((....(((((((..........)))))))-..)))))))))))).))-------------------- ( -23.70) >DroYak_CAF1 23895 95 + 1 UGCUAAUUAUAUAAUUUACAG----CUGCAUAUGCUUCCCGUUAAUAUUGCUGUAAAUAUGAGGCAUUA-AUGUGGAUAUAUGUGGCGCCCGG----UGGGUGG--- ....................(----(..((((((..(((((((((...((((..........)))))))-))).)))))))))..))((((..----.))))..--- ( -25.20) >DroAna_CAF1 21579 101 + 1 UACUAAUUAUAUAAUUUACAGACACUUGCAUAUGGCCACCGUCGAUAU---UGUAGGAAUGGGGCAUUAAAUGUAAAUAAAUG---CGCCCAAUUGGUGGGUGGCUG ..................(((.((((..(...((((....))))....---........(((((((((...........))))---).))))....)..)))).))) ( -23.20) >consensus UGCUAAUUAUAUAAUUUACAG____CAGCAUAUGCUUCCCGUUAAUAGUGCUGUAAAUAUGAGGCAUUA_AUGCGAAUAUAUGUGGCGCCCGC____UGGGUGG___ ................((((.......(((((((((((..(((.(((....))).)))..)))))))...)))).......)))).((((((.....)))))).... (-13.40 = -14.26 + 0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:54 2006