Locus 540

Sequence ID 3L_DroMel_CAF1
Location 1,570,519 – 1,570,609
Length 90
Max. P 0.670885
window822

overview

Window 2

Location 1,570,519 – 1,570,609
Length 90
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 92.97
Mean single sequence MFE -15.80
Consensus MFE -12.94
Energy contribution -13.22
Covariance contribution 0.28
Combinations/Pair 1.10
Mean z-score -1.45
Structure conservation index 0.82
SVM decision value 0.29
SVM RNA-class probability 0.670885
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1570519 90 + 23771897
AAUC-GGAAUCCCAAGGC-CCGCAUAAAAACUUCCGUUUGUCACCUUAUAAGGUGGUCAUCAUAAAAAAGCGAUGAAAACCAAACCAAAACA
....-((((.......(.-...)........))))(((((((((((....))))))(((((..........)))))....)))))....... ( -15.56)
>DroSec_CAF1 14970 90 + 1
AAUC-GGAAUCCCAAGGC-CCGCAUUAAAACUUCCGUUUGUCACCUUAUAAGGUGGUCAUCAUAAAAAAGCGAUGAAAACCAAACCAAAACA
....-((((.......(.-...)........))))(((((((((((....))))))(((((..........)))))....)))))....... ( -15.56)
>DroSim_CAF1 15221 91 + 1
AAUAAGGAAUCCCAAGGC-CCGCAUUAAAACUUCCGUUUGUCACCUUAUAAGGUGGUCAUCAUAAAAAAGCGAUGAAAACCAAACCAAAACA
.....((((.......(.-...)........))))(((((((((((....))))))(((((..........)))))....)))))....... ( -15.46)
>DroEre_CAF1 21181 90 + 1
AAUC-GGAAUUCCAAGGCCCCGCAUAAAAACUUCCGUUUGUCACCUUAUAAGGUGGCCAUCAUAAA-AAGCGAUGAAAGCCAAACCAAAACA
....-((....))..(((..(((....((((....))))(((((((....))))))).........-..)))......)))........... ( -18.70)
>DroYak_CAF1 15527 90 + 1
AAUC-CGAGUUCCAAGGCCCCGCAUAAAAACUUCCGUUUGUCGCCGUAUAAGGUGGUCGUCAUAAA-AAGCGAAGAAAACCAAACCAAAACA
....-.(((((.....((...)).....)))))..((((((((((......)))))((((......-..)))).......)))))....... ( -13.70)
>consensus
AAUC_GGAAUCCCAAGGC_CCGCAUAAAAACUUCCGUUUGUCACCUUAUAAGGUGGUCAUCAUAAAAAAGCGAUGAAAACCAAACCAAAACA
.....((((.......((...))........))))((((((((((......)))))(((((..........)))))....)))))....... (-12.94 = -13.22 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:47 2006