Locus 5393

Sequence ID	3L_DroMel_CAF1
Location	14,806,745 – 14,806,859
Length	114
Max. P	0.847286

overview

Window 4

Location	14,806,745 – 14,806,859
Length	114
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	90.41
Mean single sequence MFE	-38.42
Consensus MFE	-30.66
Energy contribution	-31.72
Covariance contribution	1.06
Combinations/Pair	1.03
Mean z-score	-2.00
Structure conservation index	0.80
SVM decision value	0.77
SVM RNA-class probability	0.847286
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14806745 114 + 23771897
CACGACUUUGAACUACAUUUGUGGGGGUUUGGCCUGCAAUGCCACCAAAUCCCCGCGGACUGGCUAAGUUUGUUGUUGGGGGUAGAAUGGUAGGUAUGGUGGGUACGGUGUUAU
((((((((....((((....)))))))))..(((..(.(((((((((.(((((((((((((.....)))))))....))))))....)))).))))).)..)))...))).... ( -38.70)
>DroSec_CAF1 42035 105 + 1
CACGACUUUGAACUACAUUUGUGGGGGUUUGGCCUGCAAUGCCACCAAAUCCCCGCGGACUGCCUAAGUUUGUUGUUGGGGGUAGAAUG---------GUGGGUACGGUGGUAU
.((.(((.....((((.(((((((((((((((...((...))..)))))))))))))))((((((..(........)..))))))....---------))))....))).)).. ( -38.10)
>DroSim_CAF1 34919 105 + 1
CACGACUUUGAACUACAUUUGUGGGGGUUUGGCCUGCAAUGCCACCAAAUCCCCGCGGACUGCCUAAGUUUGUUGUUGGGGGUAGAAUG---------GUGGGUACGGUGGUAU
.((.(((.....((((.(((((((((((((((...((...))..)))))))))))))))((((((..(........)..))))))....---------))))....))).)).. ( -38.10)
>DroYak_CAF1 44875 100 + 1
CACGACUUUGAACUACAUUUGUGGGGGUUUGCCCUGCAAUGCCAUCAAAUCCCCGCGGACUGCUUAAGUUUGUUGUUGGGGGUA---UG---------GUGG--AUGGUGGGAU
............((((..(((..(((.....)))..)))..((((((.(((((((((((((.....)))))))....)))))).---))---------))))--...))))... ( -38.80)
>consensus
CACGACUUUGAACUACAUUUGUGGGGGUUUGGCCUGCAAUGCCACCAAAUCCCCGCGGACUGCCUAAGUUUGUUGUUGGGGGUAGAAUG_________GUGGGUACGGUGGUAU
.((.(((.....((((.(((((((((((((((...((...))..)))))))))))))))((((((..(........)..)))))).............))))....))).)).. (-30.66 = -31.72 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:13 2006