| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,784,466 – 14,784,578 |
| Length | 112 |
| Max. P | 0.814693 |
| Location | 14,784,466 – 14,784,578 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.10 |
| Mean single sequence MFE | -27.90 |
| Consensus MFE | -22.97 |
| Energy contribution | -23.08 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.66 |
| SVM RNA-class probability | 0.814693 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14784466 112 - 23771897 CCACUCAGCUGGCU-CAGCUUCAUAAGCAUCACUCAAAGCAUUUCAG---CUGCUGCUGUUUUGCUUAUUUGCAUCAAGUCGAGUGGGUUUCGCUUCUUUAUUAUUACGUUUU----UUU ((((((.(((.((.-..(((.....)))........(((((...(((---(....))))...)))))....))....))).))))))..........................----... ( -28.90) >DroSec_CAF1 27482 110 - 1 CCACUCAGCUGGCU-CAGCUUCAUAAGCAUCACUCAAAGCAUUUCAG---CUGCUGCUGUUUUGCUUAUUUGCAUCAAGUCGAGUGGGUUUCGCUUCUUUAUUAUUACGUUUU------U ((((((.(((.((.-..(((.....)))........(((((...(((---(....))))...)))))....))....))).))))))..........................------. ( -28.90) >DroSim_CAF1 19677 110 - 1 CCACUCAGCUGGCU-CAGCUUCAUAAGCAUCACUCAAAGCAUUUCAG---CUGCGGCUGUUUUGCUUAUUUGCAUCAAGUCGAGUGGGUUUCGCUUCUUUAUUAUUACGUUUU------U ((((((.(((.((.-..(((.....)))........(((((...(((---(....))))...)))))....))....))).))))))..........................------. ( -28.70) >DroEre_CAF1 26740 110 - 1 CCACUCAGCUGGCU-CGGCUUCAUAGGCAUCACUCAAAACGCUUCAG---CUGCUGCCGUUUUGCUUAUUUGCAUCAAGUCGAGUGGGUUUUGCUUCUUUAUUAUUACGUUUU------U ((((((.((((((.-(((((....((((............)))).))---)))..)))....(((......)))...))).))))))..........................------. ( -27.30) >DroYak_CAF1 27683 113 - 1 CCACUCAGCUGGCU-CAGCUUCAUAGGCAUCACUCAAAGCAUUUCAGUUGCUGCUGCUGUUUUGCUUAUUUGCAUCAAGUCGAGUGGGUUUCGCUUCUUUAUUAUUACGUUUU------U ((((((.(((....-..((...(((((((..((.((.((((.......))))..))..))..)))))))..))....))).))))))..........................------. ( -27.30) >DroAna_CAF1 26624 117 - 1 CCACUCAGCUGGCUUCAGCUUCAUAAGCAUCAUUCAAACCGUUUCUG---CUGCCGCUGCCUUGCUUAUUUGCAUCAAGCCGAGUGGGUUUCGCUUCUUUAUUAUUACGUUUUAUUUUUU ((((((.((((((..(.((..((.((((............)))).))---..)).)..))).(((......)))...))).))))))................................. ( -26.30) >consensus CCACUCAGCUGGCU_CAGCUUCAUAAGCAUCACUCAAAGCAUUUCAG___CUGCUGCUGUUUUGCUUAUUUGCAUCAAGUCGAGUGGGUUUCGCUUCUUUAUUAUUACGUUUU______U (((((((((((....)))))..(((((((..((....((((..........))))...))..)))))))............))))))................................. (-22.97 = -23.08 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:43 2006