Locus 5370

Sequence ID 3L_DroMel_CAF1
Location 14,780,745 – 14,780,865
Length 120
Max. P 0.506791
window8491

overview

Window 1

Location 14,780,745 – 14,780,865
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.33
Mean single sequence MFE -26.70
Consensus MFE -21.12
Energy contribution -20.80
Covariance contribution -0.32
Combinations/Pair 1.19
Mean z-score -1.40
Structure conservation index 0.79
SVM decision value -0.05
SVM RNA-class probability 0.506791
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14780745 120 + 23771897
CAUAAAAAUACAAAUUUUGCUGCGGGAUUUGUAGCUAGAUUGAACUUCUAAUUGAAAAAUGUUGCAUCAGGUUGCCAUUGCAAAAGUGAAUUUAAAAAUUCAAGGUUCAUGUAGCGCAAA
........(((((((((((...)))))))))))((((.((.((((((....(((...((((..(((......))))))).)))...((((((....)))))))))))))).))))..... ( -26.60)
>DroSec_CAF1 23676 120 + 1
CAUAAAAAUACAAAUUUUGCUGCGGGAUUUGUAGCUAGAUUGAACUUCUAAUUGAAAAAUGUUGCAUCAGGUUGCCAUUGCAAAAGUGAAUUUAAAAAUUCAAGGUUCACGCAGCGCAAA
........(((((((((((...)))))))))))((((((.......))))..........(((((......((((....))))..((((((((.........)))))))))))))))... ( -26.60)
>DroSim_CAF1 15845 120 + 1
CAUAAAAAUACAAAUUUUGCUGCGGGAUUUGUAGCUAGAUUGAACUUCUAAUUGAAAAAUGUUGCAUCAGGUUGCCAUUGCGAAAGUGAAUUUAAAAAUUCAAGGUUCACGCAGCGCAAA
..................((((((((((((((((((.(((..((((((.....)))....)))..))).))))))..(..(....)..).............)))))).))))))..... ( -27.80)
>DroEre_CAF1 22979 120 + 1
CACAAAAACACAAAAUUUGUGGCGGGAUUUGUAGAUAGAUUGAACCUCUAAUUGAAAAGUGCUGCAUCGGGUUGCCAUUGCGAAAGUGAAUUUAAAAAUUCAAGGCUCACGUAGCGCAAA
...............((((((((((.((((...((((((.......))).)))...)))).))))..((....(((...((....))(((((....)))))..)))...))...)))))) ( -25.00)
>DroYak_CAF1 23873 120 + 1
CAUAAAAAUACAAAUUUUGUUGCGGGAUUUGUAGAUAGAUUCAACUUCUAAUUGAAAAAUGUUGCAUCAGGUUGUCGUUGCGAAAGUGAAUUUCAAAAUUCAACGUUCGCGUAGCGCAAG
........(((((((((((...)))))))))))....(((.(((((((.....)))....)))).)))...(((.(((((((((..((((((....))))))...))))))..)))))). ( -27.50)
>consensus
CAUAAAAAUACAAAUUUUGCUGCGGGAUUUGUAGCUAGAUUGAACUUCUAAUUGAAAAAUGUUGCAUCAGGUUGCCAUUGCGAAAGUGAAUUUAAAAAUUCAAGGUUCACGUAGCGCAAA
........(((((((((((...)))))))))))..((((.......))))..........(((((......((((....))))..((((((((.........)))))))))))))..... (-21.12 = -20.80 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:31 2006