Locus 5362

Sequence ID 3L_DroMel_CAF1
Location 14,774,866 – 14,774,978
Length 112
Max. P 0.934850
window8473

overview

Window 3

Location 14,774,866 – 14,774,978
Length 112
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 80.78
Mean single sequence MFE -31.10
Consensus MFE -20.46
Energy contribution -20.65
Covariance contribution 0.19
Combinations/Pair 1.19
Mean z-score -2.24
Structure conservation index 0.66
SVM decision value 1.24
SVM RNA-class probability 0.934850
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14774866 112 + 23771897
UUCAUAUUUUUGGCACAAUUUAUGGCCCCCUUUUUUUUUGCCAGUGAGCCAUCAAGAAGUGAGCAGAAAAGAGUCUUGGGCCAAGUCGAAGGGUUCUUUUUUGUGGGUUUCC
.((((.((((((((.((.....((((.............)))).)).))))..)))).))))((((((((((..(((.(((...)))..)))..))))))))))........ ( -29.52)
>DroSec_CAF1 17826 108 + 1
UUGAUAUU-UUGGCACAACUUAUGGC---AUUUUUUUUUGUCAGUGUGCCAUCAAGAAGUGAGCAGAAAAGAGUCUUGGGCCAAGUCGAAGGGAUCUUUUUUGUGGGUUUCC
((((....-.(((((((.....((((---(........))))).)))))))))))((((...((((((((((.((((.(((...))).))))..))))))))))...)))). ( -34.20)
>DroEre_CAF1 17375 92 + 1
----------------AGUUUAUGGC---ACGCUUUUUUCUCAGUGAGCCAUCAAGAAGUGAGCAGAACAGAGUCUUGG-CCAAGUCGCAGGAUUCUUUUUUGUGGGCUUCC
----------------.....(((((---.((((........)))).)))))...(((((..((((((.(((((((((.-(......)))))))))).))))))..))))). ( -32.10)
>DroYak_CAF1 17845 93 + 1
----------------AAUUUAUGGC---ACACUUUUUUGUCAGUGAGCCAUCAAGAAGUGAGCAGAAAAGAGUCUUGGACCAAGUCGAAGGGUUCUUUUUUGUGGGUUUCC
----------------.....(((((---.((((........)))).)))))...((((...((((((((((..(((.(((...)))..)))..))))))))))...)))). ( -28.60)
>consensus
________________AAUUUAUGGC___ACUCUUUUUUGUCAGUGAGCCAUCAAGAAGUGAGCAGAAAAGAGUCUUGGGCCAAGUCGAAGGGUUCUUUUUUGUGGGUUUCC
.....................(((((....((((........)))).)))))...(((((..(((((((((((((((.(((...)))..)))))))))))))))..))))). (-20.46 = -20.65 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:14 2006