Locus 5360

Sequence ID 3L_DroMel_CAF1
Location 14,772,742 – 14,772,860
Length 118
Max. P 0.666952
window8471

overview

Window 1

Location 14,772,742 – 14,772,860
Length 118
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.20
Mean single sequence MFE -22.69
Consensus MFE -15.63
Energy contribution -16.07
Covariance contribution 0.44
Combinations/Pair 1.28
Mean z-score -1.89
Structure conservation index 0.69
SVM decision value 0.28
SVM RNA-class probability 0.666952
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14772742 118 + 23771897
UUUGCUGAAAAUUAAACGGAAAUAAUUGAAUUAUGCUUAAAUCAAAUGAGAAGCAU-UCGAUUCAAUUUGAUCGAAAGGCAGCAAUCGCAUUGAAUAAAUAAAUA-GUAAGUGCAGUAAA
.((((((................(((((((((((((((...((....)).))))))-..)))))))))...((....))))))))..(((((...((......))-...)))))...... ( -26.50)
>DroSec_CAF1 15734 118 + 1
UUUGCUGAAAAUUAAACGGAAAUAAUUGAAUUAUGCUUAAAUCAAAUGUGAAGCAU-UCGAUUAAAUUUGAUCGCAAGGCAGCAAUCGCAUUGAAUAAAUAAAUA-GUAAUAGCAGUAAA
.((((((.........((((..(((((((...((((((....(....)..))))))-)))))))..)))).((....))))))))..((((((............-.)))).))...... ( -19.32)
>DroEre_CAF1 15396 119 + 1
UUUGCUGAAAAUUAAACGGAAAUAAUUGCAUUAUGCUUAAAUCAAAUGAGAAGCAUUUCAGUUGAAUUUGAACAAAAGGCAACAAUCGCAUAGUAUAAAUAAAUAUCCGAGCGCAGGGA-
((((((....).....((((..((.(((.((((((((((((((((.(((((....))))).))).))))))......(....)....))))))).))).))....))))...)))))..- ( -21.00)
>DroYak_CAF1 15779 120 + 1
UUUGCUGAAAAUUAAACGGAAAUAAUUGAAUUAUGCUUAAAUCGAAUGAGAAGCGUUUCAAUUGAAUUUGAUCAAAAGGCAGCAAUCGCAUUGAAUAAAUAAAUAUGCGAGCGCUGUGAA
................((((..((((((((..((((((...((....)).))))))))))))))..))))........(((((..((((((.............))))))..)))))... ( -27.72)
>DroAna_CAF1 15554 117 + 1
UUUGUUGAGAAUUAAACGGAAAUAAUUGAAUUAUGCUUAAAUCAAAUGAGAACCUU-UCAAUUCAAUCCAAUCGAAAGUCAACAAGCACAUUGAAUAAAUAAAUAUGA--GAGCGGAGCA
.(((((((.........(((...(((((((.....((((.......)))).....)-))))))...)))...(....))))))))((.(.((..(((......)))..--))...).)). ( -18.90)
>consensus
UUUGCUGAAAAUUAAACGGAAAUAAUUGAAUUAUGCUUAAAUCAAAUGAGAAGCAU_UCAAUUCAAUUUGAUCGAAAGGCAGCAAUCGCAUUGAAUAAAUAAAUAUGCAAGAGCAGUGAA
.((((((.........((((..(((((((...((((((...((....)).)))))).)))))))..)))).........))))))................................... (-15.63 = -16.07 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:12 2006