| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,769,169 – 14,769,287 |
| Length | 118 |
| Max. P | 0.767760 |
| Location | 14,769,169 – 14,769,287 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.18 |
| Mean single sequence MFE | -26.01 |
| Consensus MFE | -20.50 |
| Energy contribution | -19.74 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.79 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.767760 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14769169 118 + 23771897 UAAUAUUAUUUUGCUUCUAAUUAAAGCGAGUUUGUCCAGUUUUUCAGUCGUUACUUUUGCGGUGCGAUUUGAUUUGAUU--UGCUUCGGUUUUUGCGUCGAAGUUUUUGCGACAAAUCUU ..........((((((.......))))))((((((((((..((((((((((.(((.....))))))))).(((.(((..--.((....))..))).)))))))...))).)))))))... ( -24.30) >DroSec_CAF1 12220 118 + 1 UAAUAUUAUUUUGCUUCUAAUUAAAGCGAGUUUGUCCAGUUUUUUAGUCGUUACUUUUGCGUUGCGAUUUGAUUUGAUU--UGCUUCGGUUUUUGCGUCGAAGUUUUUGCGACGAAUCUU ............((....(((..(((((((((.(((.........((((((.((......)).)))))).)))..))))--)))))..)))...))((((.........))))....... ( -23.60) >DroSim_CAF1 12375 117 + 1 UAAUAUUAUUUUGCUUCUAAUUAAAGCGAGUUUGUCCAGUU-UUUAGUCGUUACUUUUGCGUUGCGAUUUGAUUUGAUU--UGCUUCGGUUUUUGCGUCGAAGUUUUUGCGACGAAUCUU ............((....(((..(((((((((.....((((-...((((((.((......)).)))))).)))).))))--)))))..)))...))((((.........))))....... ( -23.90) >DroEre_CAF1 11825 118 + 1 UAAUAUUAUUUUGCUUCUAAUUAAAGCGAGUUUGUCCAGUUUUUUAGUUGCUACUUUUGCGAUGCGAUUCGAUUUGAUU--UGCUUGGGAUUUUGCGACGGAGUUUCUGCGACGAAUAUU ..........((((((.......))))))((((((((((...(((.(((((.....((.(((.((((.((.....)).)--)))))).))....))))).)))...))).)))))))... ( -29.40) >DroYak_CAF1 12209 119 + 1 UAAUAUUAUUUUGCUUCUAAUUAAAGCGAGUUUGUCCAGUUUCUUAGUCGUUAUUUUUGCGAUGCGAUUUGAUUUGAUUUUUGCUUCGGUUUUUGCGACGGAGUUUCUGCGACGAAU-UU ............((((.......))))((((((((((((...(((.(((((........(((.((((.............)))).)))......))))).)))...))).)))))))-)) ( -28.86) >consensus UAAUAUUAUUUUGCUUCUAAUUAAAGCGAGUUUGUCCAGUUUUUUAGUCGUUACUUUUGCGAUGCGAUUUGAUUUGAUU__UGCUUCGGUUUUUGCGUCGAAGUUUUUGCGACGAAUCUU ..........((((((.......))))))((((((((((......((((((............)))))).............((((((..........))))))..))).)))))))... (-20.50 = -19.74 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:48:07 2006