| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,564,378 – 1,564,489 |
| Length | 111 |
| Max. P | 0.995269 |
| Location | 1,564,378 – 1,564,477 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 77.97 |
| Mean single sequence MFE | -25.89 |
| Consensus MFE | -13.93 |
| Energy contribution | -14.71 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.05 |
| Mean z-score | -4.62 |
| Structure conservation index | 0.54 |
| SVM decision value | 2.56 |
| SVM RNA-class probability | 0.995269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1564378 99 + 23771897 ACGAUUUUGCGCAACGCGAAAAUCAAUUUUCAAUUUGCAUGCCGAAAAAAAAAUGAUUAAACAAAUACAAAUUGAGAGUGAUUUUCGCGUGCAAAAUUA ..((((((((...((((((((((((.(((((((((((.((........................)).))))))))))))))))))))))))))))))). ( -32.96) >DroEre_CAF1 14962 95 + 1 AUGAUUUUGCGCAACGCGAAAAUCAAUUUUCAAUUUGCAUGCCGAAAAAAAUGUGAAU--AGAAAUAUAAUUUCA--GUGUUUUUCGCGUGCGAAAUUA .(((((((((...(((((((((.((..((((.(((..(((..........)))..)))--.))))..........--.)).)))))))))))))))))) ( -25.72) >DroYak_CAF1 9014 79 + 1 A---------------CGAAAAUCAAUUUUGAAUUUGCAUGCCGAAAAA---UUGAAU--AGAAAUAUAAUUUCAGAGUGUUUUUCGCGUGCAAAAUUA .---------------(((((.....)))))..(((((((((.((((((---(.....--.(((((...))))).....)))))))))))))))).... ( -19.00) >consensus A_GAUUUUGCGCAACGCGAAAAUCAAUUUUCAAUUUGCAUGCCGAAAAAAA_AUGAAU__AGAAAUAUAAUUUCAGAGUGUUUUUCGCGUGCAAAAUUA .................................(((((((((.((((((....((((..............)))).....))))))))))))))).... (-13.93 = -14.71 + 0.78)
| Location | 1,564,398 – 1,564,489 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 75.45 |
| Mean single sequence MFE | -18.04 |
| Consensus MFE | -11.20 |
| Energy contribution | -11.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.765606 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1564398 91 - 23771897 ---------------------AUCUAAUUUGCAUAAUUUUGCACGCGAAAAUCACUCUCAAUUUGUAUUUGUUUAAUCAUUUUUUUUUCGGCAUGCAAAUUGAAAAUUGAUU ---------------------........((((......))))......(((((...((((((((((..(((..((..........))..)))))))))))))....))))) ( -15.20) >DroEre_CAF1 14982 108 - 1 CCUCCGCCGCCCUGUGGACUUAUCUAAUUUGCAUAAUUUCGCACGCGAAAAACAC--UGAAAUUAUAUUUCU--AUUCACAUUUUUUUCGGCAUGCAAAUUGAAAAUUGAUU ..(((((......)))))......((((((((((..(((((....)))))....(--(((((..........--...........)))))).)))))))))).......... ( -21.30) >DroYak_CAF1 9019 107 - 1 CCUCCCCCGCCGCGUUGACUUGUCUAAUUUGCAUAAUUUUGCACGCGAAAAACACUCUGAAAUUAUAUUUCU--AUUCAA---UUUUUCGGCAUGCAAAUUCAAAAUUGAUU ........(((((((.((....))......(((......)))))))((((((......(((((...))))).--......---))))))))).................... ( -17.62) >consensus CCUCC_CCGCC__GU_GACUUAUCUAAUUUGCAUAAUUUUGCACGCGAAAAACACUCUGAAAUUAUAUUUCU__AUUCAA_UUUUUUUCGGCAUGCAAAUUGAAAAUUGAUU ........................((((((((((..(((((....)))))........((((.....)))).....................)))))))))).......... (-11.20 = -11.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:44:35 2006