Locus 5349

Sequence ID 3L_DroMel_CAF1
Location 14,762,735 – 14,762,836
Length 101
Max. P 0.835839
window8457

overview

Window 7

Location 14,762,735 – 14,762,836
Length 101
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 81.62
Mean single sequence MFE -47.16
Consensus MFE -32.80
Energy contribution -34.68
Covariance contribution 1.88
Combinations/Pair 1.18
Mean z-score -1.96
Structure conservation index 0.70
SVM decision value 0.73
SVM RNA-class probability 0.835839
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14762735 101 - 23771897
AUGGGUCCGUUCGGCACACUGCUGCCCCUCUGCAUAC------CCAUCGGCGGUGCCUGCGGCUGUUGCUGCGAUGGAGGCGGCGGUGGUCCUGGUCCGGGUCCAUA
((((..(((.((((..((((((((((((((.((((.(------(....))..))))..(((((....))))))).)).))))))))))...))))..)))..)))). ( -51.90)
>DroSec_CAF1 5634 101 - 1
AUGGGUCCGUUUGGCACACUGCUGCCCCUCUGCAUAC------CCAUCGGCGGUGCCUGCGGCUGUUGCUGCGAUGGAGGCGGCGGUGGUCCUGGUCCGGGUCCAUA
((((..(((...((..((((((((((((((.((((.(------(....))..))))..(((((....))))))).)).))))))))))..)).....)))..)))). ( -51.00)
>DroSim_CAF1 5761 101 - 1
AUGGGUCCGUUUGGCACACUGCUGCCCCUCUGCAUAC------CCAUCGGCGGUGCCUGCGGCUGUUGCUGCGAUGGAGGCGGCGGUGGUCCUGNNNNNNNNNNNNN
............(((.((((((((((((((.((((.(------(....))..))))..(((((....))))))).)).)))))))))))))................ ( -38.40)
>DroEre_CAF1 5521 101 - 1
AUGGGUCCGUUCGGCACACUGCUGCCCCUCUGCAUUC------CCAUCGGCGGUGGCUGCUGUUGUUGCUGCGAUGGAGGCGGCGGUGGUCCUGGGCCGGGUCCAUA
((((..((((((((..((((((((((((..((((.(.------.((.((((((...)))))).))..).))))..)).))))))))))...))))).)))..)))). ( -53.10)
>DroAna_CAF1 5179 101 - 1
AUCGGUCCAUUGGGCACACUGCUCCCCCGCUGCAUUCCACCGCCCAUCGGCUGCGCCUGUUGCUGCUGCUGCGAUGGGUUGGGUGGCGGCCCUAGGC------CAUA
...((((....((((....(((.........)))..(((((((((((((((.((((.....)).)).))..))))))))..)))))..))))..)))------)... ( -41.40)
>consensus
AUGGGUCCGUUCGGCACACUGCUGCCCCUCUGCAUAC______CCAUCGGCGGUGCCUGCGGCUGUUGCUGCGAUGGAGGCGGCGGUGGUCCUGGGCCGGGUCCAUA
((((..(((...(((.((((((((((((..((((..........((.((((.((....)).)))).)).))))..)).)))))))))))))......)))..)))). (-32.80 = -34.68 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:59 2006