Locus 5332

Sequence ID 3L_DroMel_CAF1
Location 14,724,225 – 14,724,315
Length 90
Max. P 0.963758
window8430

overview

Window 0

Location 14,724,225 – 14,724,315
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 95.46
Mean single sequence MFE -27.94
Consensus MFE -27.02
Energy contribution -26.54
Covariance contribution -0.48
Combinations/Pair 1.07
Mean z-score -1.42
Structure conservation index 0.97
SVM decision value 1.56
SVM RNA-class probability 0.963758
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14724225 90 - 23771897
CGCGGGGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGGCUAUAUGUUUUUACCCCGUA-GGGUCUCGGUCUCU
.(((((.((..((((((....))).)))...)))))))....((((.(((((((..((((..((....))...)))-)))))))).)))). ( -27.70)
>DroSec_CAF1 29999 90 - 1
CGCGGGGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGACUAUAUGUUUUUACCCCGUA-GGGUCUCGAUCUCU
.(((((.((..((((((....))).)))...)))))))....((((.(((((((..((((..((....))...)))-)))))))).)))). ( -27.70)
>DroSim_CAF1 31706 89 - 1
CGCGGGGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGACUAUAUGUUUUUGCCCCGUA-GGGUCUCG-UCUCU
.(((((.((..((((((....))).)))...)))))))....((((.(((((((..((((..((....))...)))-))))))))-)))). ( -27.30)
>DroEre_CAF1 30014 90 - 1
CGCGGAGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGACUUUAUGUUUUUACCCUGUA-GGGUCUCGGUCUCU
.(((((.((..((((((....))).)))...)))))))....((((.((((((.(((.....))).....((....-)))))))).)))). ( -27.60)
>DroYak_CAF1 30628 91 - 1
CGCGGAGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGGCUUUAUGUUUUUGCCCUGUAAGGGUCUCGGUCUCU
.(((((.((..((((((....))).)))...)))))))....((((.((((((((((...........))).......))))))).)))). ( -29.41)
>consensus
CGCGGGGUCUCUCCGCUCUUAAGCUGGACUUGAUCUGCAUACGAGAAUGAGACUGACUAUAUGUUUUUACCCCGUA_GGGUCUCGGUCUCU
.(((((.((..((((((....))).)))...)))))))....((((.((((((.(((.....)))....((......)))))))).)))). (-27.02 = -26.54 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:33 2006