Locus 5331

Sequence ID 3L_DroMel_CAF1
Location 14,723,020 – 14,723,116
Length 96
Max. P 0.980327
window8429

overview

Window 9

Location 14,723,020 – 14,723,116
Length 96
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 98.55
Mean single sequence MFE -17.50
Consensus MFE -17.50
Energy contribution -17.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.65
Structure conservation index 1.00
SVM decision value 1.86
SVM RNA-class probability 0.980327
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14723020 96 - 23771897
UUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCGAACCAACAAACAAAA-AAAGUGCGCUCCGUGAGCGGGAAAACAAUAACAAA
....((((.(((((((((((((......))))))...........................-..((....)).)).))))).))))........... ( -17.50)
>DroSec_CAF1 28837 96 - 1
UUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCGAACCAACAAACAAAA-AAAGUGCGCUCCGUGAGCGGGAAAACAAUAACAAA
....((((.(((((((((((((......))))))...........................-..((....)).)).))))).))))........... ( -17.50)
>DroSim_CAF1 30545 96 - 1
UUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCGAACCAACAAACAAAA-AAAGUGCGCUCCGUGAGCGGGAAAACAAUAACAAA
....((((.(((((((((((((......))))))...........................-..((....)).)).))))).))))........... ( -17.50)
>DroEre_CAF1 28772 96 - 1
UUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCAAACCAACAAACAAAA-AAAGUGCGCUCCGUGAGCGGGAAAACAAUAACAAA
....((((.(((((((((((((......))))))...........................-..((....)).)).))))).))))........... ( -17.50)
>DroYak_CAF1 29398 97 - 1
UUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCAAACCAACAAACAAAAAAAAGUGCGCUCCGUGAGCGGGAAAACAAUAACAAU
....((((.(((((((((((((......)))))).....................((........))......)).))))).))))........... ( -17.50)
>consensus
UUUCUUUUGCGCUCCGGUGAGAAGAUAAUUUCACAAACCAAAACCGAACCAACAAACAAAA_AAAGUGCGCUCCGUGAGCGGGAAAACAAUAACAAA
....((((.(((((((((((((......)))))).....................((........))......)).))))).))))........... (-17.50 = -17.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:32 2006