Locus 5314

Sequence ID 3L_DroMel_CAF1
Location 14,675,743 – 14,675,850
Length 107
Max. P 0.500000
window8400

overview

Window 0

Location 14,675,743 – 14,675,850
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 84.79
Mean single sequence MFE -25.72
Consensus MFE -20.98
Energy contribution -21.62
Covariance contribution 0.64
Combinations/Pair 1.16
Mean z-score -1.49
Structure conservation index 0.82
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14675743 107 + 23771897
AUAGCCUAAUUCGAAGCGCCAAUAUGGCGUAUGCGCCGCGUGUUCCGAGCGUGAAAUAA------AAGCACGCCAAGCGCGUCCCAUUAAAAAGGCAAAUAAACAAGUCAC-------AG
...((((........(((((.....)))))((((((.(((((((...(........)..------.)))))))...))))))..........))))...............-------.. ( -30.40)
>DroSec_CAF1 25594 107 + 1
AUAGCCUAAUUCGAAGCGCCAAUAUUGCGUAUGCGCCGCGUGUUUCGAGCGUGAAAUAA------AAGCACGCCAAGCGCGUCCCAUUAAAAAGGCAAAUAAACAAGUCAC-------AC
...((((........((((.......))))((((((.((((((((..(........)..------))))))))...))))))..........))))...............-------.. ( -27.70)
>DroSim_CAF1 26270 107 + 1
AUAGCCUAAUUCGAAGCGCCAAUAUUGCGUAUGCGCCGCGUGUUGCGAGCGUGAAAUAA------AAGCACGCCAAGCGCGUCCCAUUAAAAAGGCAAAUAAACAAGUCAC-------AG
...((((........((((.......))))(((((((((.....))).(((((......------...)))))...))))))..........))))...............-------.. ( -27.20)
>DroEre_CAF1 26016 107 + 1
AUAGCCUAAUUCAAAGCGCCAAUAUUGCGUAUGCGCCGCGUGUUGCGAGCUUGAAAUAA------AAUCACGCCAAGUGCGACCCAUUAAAAAGGCAAAUAAACAAGUCAC-------AG
...((((..(((((.((.(((((((.(((....)))...)))))).).)))))))....------.....(((.....)))...........))))...............-------.. ( -23.20)
>DroYak_CAF1 26340 107 + 1
AUAGCCUAAUUCAAAGCGCCAAUAUUGCGUAUGCGCCGCGUGUUGCGAGCCUGAAAUAA------AAGCACGCCAAGCGCGCCCCAUUAAAAAAGCAAAUAAACAAGACAC-------AG
...((..........((((.......))))..((((.(((((((...............------.)))))))...))))..............))...............-------.. ( -21.19)
>DroAna_CAF1 22827 109 + 1
AUAGCCUAAUUUAAGGCGUUGGAAUUGCGUAUGCAUCGCGUGUUUUGAGCGUGAAAUAAAAAUAAAAACACGCCAA-----------UUAAAAGGCAAAUAAACAAGUCUGAGACACAAG
...((((......)))).........(((.......)))(((((((..(((((...............)))(((..-----------......)))..........))..)))))))... ( -24.66)
>consensus
AUAGCCUAAUUCAAAGCGCCAAUAUUGCGUAUGCGCCGCGUGUUGCGAGCGUGAAAUAA______AAGCACGCCAAGCGCGUCCCAUUAAAAAGGCAAAUAAACAAGUCAC_______AG
...((((........((((.......))))..((((.(((((((......................)))))))...))))............))))........................ (-20.98 = -21.62 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:03 2006