| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,673,727 – 14,673,818 |
| Length | 91 |
| Max. P | 0.627621 |
| Location | 14,673,727 – 14,673,818 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 82.05 |
| Mean single sequence MFE | -21.54 |
| Consensus MFE | -12.29 |
| Energy contribution | -13.52 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14673727 91 - 23771897 -UACGCACAUAAAUAUGCU----GAAAGCAAUCACAAUUUCUCAGCAGAGUGUAGAGAAAUCUAUUUUUCAAUUAUGUGAACAAUGCGGUUC-------CGUU----------------- -....(((((((...((((----((................))))))(((.(((((....)))))..)))..)))))))......(((....-------))).----------------- ( -22.09) >DroSec_CAF1 23567 91 - 1 -UACGCACAUAAAUAUGCU----GAAAGCAAUCACAAUUUCUCAGCAGAGUGUAGAGAAAUCUAUUUUUCAAUUAUGUGAACAAUGCGGUUC-------CGUU----------------- -....(((((((...((((----((................))))))(((.(((((....)))))..)))..)))))))......(((....-------))).----------------- ( -22.09) >DroSim_CAF1 24380 91 - 1 -UACGCACAUAAAUAUGCU----GAAAGCAAUCACAAUUUCUCAGCAGAGUGUAGAGAAAUCUAUUUUUCAAUUAUGUGAACAAUGCGGUUC-------CGUU----------------- -....(((((((...((((----((................))))))(((.(((((....)))))..)))..)))))))......(((....-------))).----------------- ( -22.09) >DroEre_CAF1 23986 91 - 1 -UACGCACAUAAAUACGCU----GAAAGCAAUCACAAUUUCUCAGCAGAGUGUAGAGAAAUCUAUUUUUCAAUUAUGUGAACAAUGCGGUGC-------CAUU----------------- -....(((((((....(((----((................))))).(((.(((((....)))))..)))..))))))).............-------....----------------- ( -19.39) >DroYak_CAF1 24329 91 - 1 -UACGCACAUAAAUAUGCU----GAAAGCAAUCACAAUUCCUCAGCCGAGUGUAGAGAAAUCUAUUUUUCAAUUAUGUGAACAAUGCGGUUC-------CGUU----------------- -....(((((((....(((----((................))))).(((.(((((....)))))..)))..)))))))......(((....-------))).----------------- ( -20.29) >DroAna_CAF1 20721 120 - 1 GUAUACACAUCAAUAUACACAUAAAAAACAUUCACAAAUUCUCAGCCAACUAUAGAAAAAUCUAUUUUUCAAUUAUGUGAACAUGCCGGGGUCUUCCCCCGUCGAAAGACAGCCCAGCUU (((((........)))))............((((((.......((....))...((((((....)))))).....))))))...((.((((.....))))(((....)))......)).. ( -23.30) >consensus _UACGCACAUAAAUAUGCU____GAAAGCAAUCACAAUUUCUCAGCAGAGUGUAGAGAAAUCUAUUUUUCAAUUAUGUGAACAAUGCGGUUC_______CGUU_________________ ...((((........((((.......)))).(((((....(((....))).(((((....)))))..........)))))....))))................................ (-12.29 = -13.52 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:47:00 2006