Locus 5304

Sequence ID 3L_DroMel_CAF1
Location 14,661,351 – 14,661,448
Length 97
Max. P 0.500000
window8382

overview

Window 2

Location 14,661,351 – 14,661,448
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 86.38
Mean single sequence MFE -19.41
Consensus MFE -16.54
Energy contribution -16.77
Covariance contribution 0.23
Combinations/Pair 1.08
Mean z-score -1.48
Structure conservation index 0.85
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14661351 97 - 23771897
GUGUUUGUACUUGGUAAUAUAUUUGUGAGCAUUAUUUUAUUUCGUAUACCUGUUACUCGUGAACGGGUAUAUUAGACUCGCCAUGUAGUAAAUAAUA
.(((((((((.((((........((....))........(((.(((((((((((.(....)))))))))))).)))...)))).))).))))))... ( -21.20)
>DroSec_CAF1 11199 84 - 1
GUGUUUGUGCUUGGUAAUAUAUUUGUGAGCAUUAUUUUGUUUCGUAUACCUUUUACUCGUAAGCGGGUAUAU-AGACUCGU------------AAUA
(.(((((((...(((((((....)))(((((......)))))....))))...((((((....)))))))))-)))).)..------------.... ( -16.00)
>DroSim_CAF1 11811 85 - 1
GUGUUUGUGCUUGGUAAUAUAUUUGUGAGCAUUAUUUUGUUUCGUAUACCUGUUACUCGUAAGCGGGUAUAUUAGACUCGC------------AAUA
(((...((((((..............))))))......((((.(((((((((((.......))))))))))).)))).)))------------.... ( -21.04)
>consensus
GUGUUUGUGCUUGGUAAUAUAUUUGUGAGCAUUAUUUUGUUUCGUAUACCUGUUACUCGUAAGCGGGUAUAUUAGACUCGC____________AAUA
(((((..((..((......))..))..)))))......((((.(((((((((((.......))))))))))).)))).................... (-16.54 = -16.77 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:46 2006