Locus 5295

Sequence ID 3L_DroMel_CAF1
Location 14,636,147 – 14,636,241
Length 94
Max. P 0.589999
window8370

overview

Window 0

Location 14,636,147 – 14,636,241
Length 94
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 81.51
Mean single sequence MFE -17.12
Consensus MFE -10.55
Energy contribution -10.42
Covariance contribution -0.13
Combinations/Pair 1.35
Mean z-score -1.80
Structure conservation index 0.62
SVM decision value 0.11
SVM RNA-class probability 0.589999
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14636147 94 - 23771897
CUCCUCCACUAAUUUCUUUUUCUCCUAU---CGGGU------CUCAUUAAAGAACCGCUUUAGAUCAGGCA-UUUUCUGAUUUUUACAAUAUCUGGUAGUUUUC
........................((((---(((((------.....(((((.....)))))(((((((..-...)))))))........)))))))))..... ( -15.20)
>DroSec_CAF1 35000 94 - 1
CUCCUCCACUAAUUUCUUUUUCUCCUAU---CGGAU------CUCAUUAAAGAACCGCUUUAGAUCAGGCA-UUUUCUGAUUUUUACAAUAGCUGGGAGUUUUC
.....................((((((.---.((.(------((......))).))(((..((((((((..-...)))))))).......)))))))))..... ( -18.50)
>DroSim_CAF1 31241 94 - 1
CUCCUCCACUAAUUUCUUUUUCUCCUAU---CGGGU------CUCAUUAAAGAACCGCUUUAGAUCAGGCA-UUUUCUGAUUUUUACAAUAGCUGGGAGUUUUC
.....................((((((.---.((.(------((......))).))(((..((((((((..-...)))))))).......)))))))))..... ( -18.50)
>DroEre_CAF1 38322 94 - 1
CUCCUCCACUAAUUUCUUGUUCUCCUAU---CGGGU------ACCAUUAAAUAACCGCUUUAGAUCGGGCA-UUUUCUGAUUUUUACAAUAGCUGGGAGUUUCC
.....................((((((.---..(((------...........)))(((..((((((((..-...)))))))).......)))))))))..... ( -15.40)
>DroYak_CAF1 38789 94 - 1
CUCCUCCACUAAUUUCUUUUUCUCCUAU---CGGGU------CUCAUUAGAGAACCGCUUUAGAUCAGGCA-UUUUCUGAUUUUUACAAUAGCUGGGAGUUUUC
.....................((((((.---.((.(------(((....)))).))(((..((((((((..-...)))))))).......)))))))))..... ( -22.00)
>DroAna_CAF1 33308 96 - 1
CUCCU---CUAAAUUCUUCUUCUACCAUAAUCAGGCAAUGUCCUUCCUUCAGAUC--CCUUAGAACACUCAAGAUUGUGAUUUAAACAUUGGUUGGUAAUC---
.....---.....................(((((.((((((.((......))...--..(((((.(((........))).))))))))))).)))))....--- ( -13.10)
>consensus
CUCCUCCACUAAUUUCUUUUUCUCCUAU___CGGGU______CUCAUUAAAGAACCGCUUUAGAUCAGGCA_UUUUCUGAUUUUUACAAUAGCUGGGAGUUUUC
.....................((((((.....(((.......)))...........(((..((((((((......)))))))).......)))))))))..... (-10.55 = -10.42 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:35 2006