| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,628,428 – 14,628,519 |
| Length | 91 |
| Max. P | 0.527059 |
| Location | 14,628,428 – 14,628,519 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 77.43 |
| Mean single sequence MFE | -22.43 |
| Consensus MFE | -12.55 |
| Energy contribution | -13.17 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.56 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.527059 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14628428 91 - 23771897 CA--ACUUUUAUUGUCUGUGCUCGACUGCUUCGUUUUAUGGUCUUUACUAAUUGUUAUGUUGCACAAGAUAUGAAUGGAGUGUGGCACC-----AUCU ..--.............(((((..((.(((((((((....(((((...((((......))))...)))))..)))))))))))))))).-----.... ( -18.50) >DroVir_CAF1 33071 88 - 1 UU--CCUUUUUUUGGGGGUGAGGCUCUGUUGGGUUUUAUGGUCUGUACUAAUUGUUAUGUUGCACAAGAUAUGAAUUAAGUGUAGCAUG--------G .(--(((......))))(((((((((....)))))))))................((((((((((..(((....)))..))))))))))--------. ( -21.60) >DroEre_CAF1 30629 91 - 1 CA--ACUUUUAUUGUCUGUGCUCGACUGCUCCGUUUUAUGGUCUUCACUAAUUGUUAUGUUGCACAAGAUAUGAAUGGAGUGUGGCACC-----AUCU ..--.............(((((..((.(((((((((....(((((...((((......))))...)))))..)))))))))))))))).-----.... ( -21.40) >DroWil_CAF1 57021 87 - 1 GAGCACUUGAUAUGGAUGUGCCU------UGCUUUUUAUGGACUGGGCUAAUUGUUAUGUUGCACGAGAUAUGAAUUGAGUGUGGCAUA-----UUAA ..............((((((((.------(((((((((((..((.(((.(((......))))).).)).))))))..))))).))))))-----)).. ( -20.40) >DroYak_CAF1 31145 91 - 1 CA--ACUUUUAUUGUCUGUGCUCGACUGCUCCGUUUUAUGGUCUCCACUAAUUGUUAUGUUGCACAAGAUAUGAAUGGAGUGUGGCACC-----AUCG ..--.............(((((..((.(((((((((....((((....((((......))))....))))..)))))))))))))))).-----.... ( -20.20) >DroAna_CAF1 26109 96 - 1 CU--CUUUUUAUUGUCUGUGCUCGACUGCUCCGUUUUAUGGUCUUUACUAAUUGUUAUGUUGCACAAGAUAUGAAUGGAGUGUGGCGCACAGAUACUU ..--........(((((((((.(.((.(((((((((....(((((...((((......))))...)))))..))))))))))).).)))))))))... ( -32.50) >consensus CA__ACUUUUAUUGUCUGUGCUCGACUGCUCCGUUUUAUGGUCUUUACUAAUUGUUAUGUUGCACAAGAUAUGAAUGGAGUGUGGCACC_____AUCU .................(((((.....(((((((((....((((....((((......))))....))))..)))))))))..))))).......... (-12.55 = -13.17 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:32 2006