| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,577,527 – 14,577,622 |
| Length | 95 |
| Max. P | 0.972723 |
| Location | 14,577,527 – 14,577,622 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 96.63 |
| Mean single sequence MFE | -21.66 |
| Consensus MFE | -20.00 |
| Energy contribution | -20.04 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.923560 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14577527 95 + 23771897 GGAGAACGGAGGCACAGAUACGAGGGAAUCGUAUCUAAUGUGACAGCUGAGGGGAAACAGAUACGCAUCUACAAGAUAAUAAGAGUCAAGUGUAC ...........((((((((((((.....))))))))....((((.((.....(....)......))(((.....))).......)))).)))).. ( -22.30) >DroSec_CAF1 52347 95 + 1 GGAGAACGGAGGCACAGAUACGAGGGAAUCGUAUCUAAUGUGACGGCUGAGGGGAAACAGAUACGCAUCUACAAGAUAAUAAGAGUCAAGUGUAC ...........((((((((((((.....))))))))....((((.((.....(....)......))(((.....))).......)))).)))).. ( -22.10) >DroSim_CAF1 54286 95 + 1 GGAGAACGGAGGCACAGAUACGAGGGAAUCGUAUCUAAUGUGACAGCUGAGGGGAAACAGAUACGCAUCUACAAGAUAAUAAGAGUCAAGCGUAC ......(((..((((((((((((.....)))))))...)))).)..)))...(....)...(((((.(((...........))).....))))). ( -21.30) >DroEre_CAF1 52171 95 + 1 GGAGAAUGCAGGCACAGAUACGAGGGAAUCGUAUCUAAUGUGACGGCUGAGGGAAAACAGAUACGCAUCUACAAGAUAAUAAGAGUCAAGUGUAC ...........((((((((((((.....))))))))....(((((.(((........)))...)..(((.....))).......)))).)))).. ( -20.40) >DroYak_CAF1 54067 95 + 1 GGAGAAUGCAGGCACAGAUACGAGGGAAUCGUAUCUAAUGUGACAGCUGAGGGAAAACAGAUACGCAUCUACAAGAUAAUAAGAGUCAAGUGCAC ...........((((((((((((.....))))))))....((((..(((........)))......(((.....))).......)))).)))).. ( -22.20) >consensus GGAGAACGGAGGCACAGAUACGAGGGAAUCGUAUCUAAUGUGACAGCUGAGGGGAAACAGAUACGCAUCUACAAGAUAAUAAGAGUCAAGUGUAC ...........((((((((((((.....))))))))....((((.((.....(....)......))(((.....))).......)))).)))).. (-20.00 = -20.04 + 0.04)
| Location | 14,577,527 – 14,577,622 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 96.63 |
| Mean single sequence MFE | -17.96 |
| Consensus MFE | -17.58 |
| Energy contribution | -17.42 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.98 |
| SVM decision value | 1.70 |
| SVM RNA-class probability | 0.972723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14577527 95 - 23771897 GUACACUUGACUCUUAUUAUCUUGUAGAUGCGUAUCUGUUUCCCCUCAGCUGUCACAUUAGAUACGAUUCCCUCGUAUCUGUGCCUCCGUUCUCC ((((...((((......((((.....)))).....(((........)))..))))....((((((((.....))))))))))))........... ( -17.50) >DroSec_CAF1 52347 95 - 1 GUACACUUGACUCUUAUUAUCUUGUAGAUGCGUAUCUGUUUCCCCUCAGCCGUCACAUUAGAUACGAUUCCCUCGUAUCUGUGCCUCCGUUCUCC ((((...((((......((((.....)))).....(((........)))..))))....((((((((.....))))))))))))........... ( -17.80) >DroSim_CAF1 54286 95 - 1 GUACGCUUGACUCUUAUUAUCUUGUAGAUGCGUAUCUGUUUCCCCUCAGCUGUCACAUUAGAUACGAUUCCCUCGUAUCUGUGCCUCCGUUCUCC ((((...((((......((((.....)))).....(((........)))..))))....((((((((.....))))))))))))........... ( -17.50) >DroEre_CAF1 52171 95 - 1 GUACACUUGACUCUUAUUAUCUUGUAGAUGCGUAUCUGUUUUCCCUCAGCCGUCACAUUAGAUACGAUUCCCUCGUAUCUGUGCCUGCAUUCUCC ((((...((((......((((.....)))).....(((........)))..))))....((((((((.....))))))))))))........... ( -17.80) >DroYak_CAF1 54067 95 - 1 GUGCACUUGACUCUUAUUAUCUUGUAGAUGCGUAUCUGUUUUCCCUCAGCUGUCACAUUAGAUACGAUUCCCUCGUAUCUGUGCCUGCAUUCUCC (((((..((((......((((.....)))).....(((........)))..))))(((.((((((((.....)))))))))))..)))))..... ( -19.20) >consensus GUACACUUGACUCUUAUUAUCUUGUAGAUGCGUAUCUGUUUCCCCUCAGCUGUCACAUUAGAUACGAUUCCCUCGUAUCUGUGCCUCCGUUCUCC ((((...((((......((((.....)))).....(((........)))..))))....((((((((.....))))))))))))........... (-17.58 = -17.42 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:46:14 2006