| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,502,004 – 14,502,124 |
| Length | 120 |
| Max. P | 0.931495 |
| Location | 14,502,004 – 14,502,124 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.00 |
| Mean single sequence MFE | -19.80 |
| Consensus MFE | -14.74 |
| Energy contribution | -16.18 |
| Covariance contribution | 1.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.931495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14502004 120 - 23771897 CACCCUCUUUAUUGGUUGUUUUUGGGAAUUCACCUUGUAGACGACCCAAUCGCCUAUAAAAGUUUCCUUCAUAACAACUGAAUCCUGUCUCUUUAAUCCGACACAUUUCCGUAUUUUCCU ...........(..((((((...(((((......((((((.(((.....))).))))))....)))))....))))))..)....((((..........))))................. ( -21.50) >DroSec_CAF1 93726 120 - 1 CAUCCUCUUUAUUGGUUGUUUUUGGGAAUUCACCUUGUAGUCGUCCCAAUCGCCUAUAAAAGUUUCCUUCAUAACAACUAAAUCCUGUCUCUUUAAUCCGACACAUUUCCUUAUUUUCCU ...........(((((((((...(((((......((((((.((.......)).))))))....)))))....)))))))))....((((..........))))................. ( -20.70) >DroSim_CAF1 108712 120 - 1 CCUCCUCUUUAUUGGUUGUUUUGGGGAAUUCACCUUGUAAUCGUCCCAAUCGCCUAUAAAAGUUUCCUUCAUAACAACUAAAUCCUGUCUCUUUAAUCCGACACAUUUCCUUAUUCUCCU ...........(((((((((..((((((((....(((((..((.......))..))))).))))))))....)))))))))....((((..........))))................. ( -18.80) >DroEre_CAF1 109302 120 - 1 CGUCCACUUUUUUGGUUGUUUUUGGGAAUUCACCUUUUCCAUGUCCAAACCGCCUAUAAAAAUGUCCUGCAUAACAACUAAAUCCUGUCUCUGCAAUCCGACACUGUUCCUUAUUUUCCU .(((((.((((..(((.((((.((((((.......)))))).....)))).)))...)))).))...((((..(((.........)))...))))....))).................. ( -16.50) >DroYak_CAF1 101540 120 - 1 CGUCCACUUUUUCGGUUGUUUUGGGGAAUUCAUCUUUCAGAUGACCCAACCGCCUAUAAAAUUCUCCUUCAUAACAACUAAAUCCUGUCGCUUCAAUCCGACAAUAAUCCUUACUUUCCU .............(((((((..((((((((((((.....)))))................))))))).....)))))))......(((((........)))))................. ( -21.49) >consensus CAUCCUCUUUAUUGGUUGUUUUUGGGAAUUCACCUUGUAGACGUCCCAAUCGCCUAUAAAAGUUUCCUUCAUAACAACUAAAUCCUGUCUCUUUAAUCCGACACAUUUCCUUAUUUUCCU ...........(((((((((...(((((......((((((.((.......)).))))))....)))))....)))))))))....((((..........))))................. (-14.74 = -16.18 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:28 2006