Locus 5247

Sequence ID 3L_DroMel_CAF1
Location 14,486,702 – 14,486,794
Length 92
Max. P 0.646294
window8298

overview

Window 8

Location 14,486,702 – 14,486,794
Length 92
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 82.22
Mean single sequence MFE -32.17
Consensus MFE -25.41
Energy contribution -25.52
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -1.49
Structure conservation index 0.79
SVM decision value 0.23
SVM RNA-class probability 0.646294
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14486702 92 - 23771897
CUGCCAGUCAAUGGAUCUACGACU------UCCAGU------------------ACCGGCCCACCGCCCGGAGUUCAAUCGGAUUUCAUUGAUGAUCUGAUUGAGGGCCAUAAGCA
..((.......((((.........------))))..------------------...(((((.((....))...(((((((((((........))))))))))))))))....)). ( -31.40)
>DroPse_CAF1 109041 98 - 1
CUGCCAGUCAAUGGGAGUUCGACUGGGACACCGGGU------------------UCCGGCCUACCGCCCGGAGUGCAAUCGGAUUUCAUUGAUGAUCUGAUUGAGGGCCAUAAGCA
..(((.((((((((.(((((((...(.((.(((((.------------------..(((....)))))))).)).)..)))))))))))))))..((.....)).)))........ ( -34.30)
>DroSec_CAF1 83076 92 - 1
CUGCCAGUCAAUGGAUCUGCGACU------UCCAGU------------------GCCGGCCCACCGCCCGGAGUUCAAUCGGACUUCAUUGAUGAUCUGAUUGAGGGCCAUAAGCA
..((..(.((.((((.........------)))).)------------------).)(((((.((....))...(((((((((..(((....)))))))))))))))))....)). ( -30.50)
>DroEre_CAF1 98377 92 - 1
CUGCCAGUCAAUGGAUCUACGACU------UCCAGC------------------ACCGGCCCACCGCCCGGAGUUCAAUCGGACUUCAUUGACGAUCUGAUUGAGGGCCAUAAGCA
..((.......((((.........------))))..------------------...(((((.((....))...(((((((((..((......))))))))))))))))....)). ( -28.50)
>DroAna_CAF1 94524 110 - 1
CUGCCAGUCAAUGGCACUUCCAUA------UCGACCACAAUAUCAACGGACUCCUCCGGCCCACCGCCCGGAGUGCAAUCGGAUUUCAUUGAUGAUCUGAUUGAGGGCCAUAAGCA
.(((((.....)))))........------.................(((....)))(((((.((....))....((((((((((........)))))))))).)))))....... ( -34.00)
>DroPer_CAF1 110054 98 - 1
CUGCCAGUCAAUGGGAGUUCGACUGGGACACCGGGU------------------UCCGGCCUACCGCCCGGAGUGCAAUCGGAUUUCAUUGAUGAUCUGAUUGAGGGCCAUAAGCA
..(((.((((((((.(((((((...(.((.(((((.------------------..(((....)))))))).)).)..)))))))))))))))..((.....)).)))........ ( -34.30)
>consensus
CUGCCAGUCAAUGGAACUUCGACU______UCCAGU__________________UCCGGCCCACCGCCCGGAGUGCAAUCGGAUUUCAUUGAUGAUCUGAUUGAGGGCCAUAAGCA
...(((.....)))...........................................(((((.((....))....((((((((((........)))))))))).)))))....... (-25.41 = -25.52 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:26 2006