Locus 5236

Sequence ID 3L_DroMel_CAF1
Location 14,454,072 – 14,454,173
Length 101
Max. P 0.605629
window8282

overview

Window 2

Location 14,454,072 – 14,454,173
Length 101
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 85.63
Mean single sequence MFE -31.28
Consensus MFE -24.41
Energy contribution -25.50
Covariance contribution 1.09
Combinations/Pair 1.20
Mean z-score -2.03
Structure conservation index 0.78
SVM decision value 0.15
SVM RNA-class probability 0.605629
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14454072 101 - 23771897
CCAUACAUUUUAAGCCAUGUUUCUGGGUGCGGAAAUGUUGCACCUGCUGUUAAAAAUGUUAACAGCACGGGGGAGCAACAUUAACAGCGUGGGG-CUGAAUU
..............(((((((((((....))))((((((((.(((((((((((.....))))))))).))....))))))))...)))))))..-....... ( -32.60)
>DroSec_CAF1 51223 100 - 1
CCAUACAUUUUAAGCCAUGUUUCUGGGUGCGGAAAUGUUGCACCUGCUGUUAAAAAUGUUAACAGCACGG-GGAGCAACAUUAACAGCGUGGGG-CUGAAUU
..............(((((((((((....))))((((((((.(((((((((((.....))))))))).))-...))))))))...)))))))..-....... ( -33.20)
>DroSim_CAF1 66316 101 - 1
CCAUACAUUUUAAGCCAUGUUUCUGGGUGCGGAAAUGUUGCACCUGCUGUUAAAAAUGUUAACAGCACGGGGGAGCAACAUUAACAGCGUGGGG-CUGAAUU
..............(((((((((((....))))((((((((.(((((((((((.....))))))))).))....))))))))...)))))))..-....... ( -32.60)
>DroEre_CAF1 66621 102 - 1
CCAUACAUUUUAAGCCAUGUUUCUGGGUGCGGAAAUGCUGCACCUGCUGUUAAAAAAGUUAACAGCACUGGGGAGCAAAGUUAACAGCGUGGGGCCUGAAUC
........((((.(((.(((((((((((((((.....))))))))((((((((.....))))))))....)))))))..((.....))....))).)))).. ( -34.30)
>DroYak_CAF1 57357 102 - 1
CCAUACAUUUUGAGCCAUGUUUCUGGGUGCGGAAAUGUUGCACCUGCUGUUAAAAAUGUUAACAGCACUGGGGAGCAAAGUUAACAGCGUGGGGCCUGAAUC
........(((..(((.(((((((((((((((.....))))))))((((((((.....))))))))....)))))))..((.....))....)))..))).. ( -31.40)
>DroAna_CAF1 64801 86 - 1
----------UGU----UGCCUGUUGGUUCGGAAAUGUUGCACCUGCUGUUAAAAAUGUUAGCAGAGCG-GCGAUUAACAUUAACAGCAUGGGG-CCCGAUC
----------...----.(((....)))((((.......((.((((((((((...((((((((......-))...)))))))))))))).)).)-))))).. ( -23.61)
>consensus
CCAUACAUUUUAAGCCAUGUUUCUGGGUGCGGAAAUGUUGCACCUGCUGUUAAAAAUGUUAACAGCACGGGGGAGCAACAUUAACAGCGUGGGG_CUGAAUC
..............(((((((((((....))))((((((((.(((((((((((.....)))))))))....)).))))))))...))))))).......... (-24.41 = -25.50 +   1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:11 2006