Locus 5232

Sequence ID 3L_DroMel_CAF1
Location 14,440,083 – 14,440,179
Length 96
Max. P 0.611813
window8278

overview

Window 8

Location 14,440,083 – 14,440,179
Length 96
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 78.05
Mean single sequence MFE -25.65
Consensus MFE -14.94
Energy contribution -15.11
Covariance contribution 0.17
Combinations/Pair 1.37
Mean z-score -1.60
Structure conservation index 0.58
SVM decision value 0.16
SVM RNA-class probability 0.611813
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14440083 96 + 23771897
AAGCGAGAAGAUUUGCAGGGAGCCUAAAGAUCUGUCCAUGACCUUCUUUGGAUGGAGAUGUAGAGUGAAGUGCGGAAAGUUCUCGGUAA--CGAGAGG------
...((((((..((((((....(((((....((((((((..........))))))))....))).))....))))))...))))))....--(....).------ ( -26.40)
>DroPse_CAF1 58699 93 + 1
AUGGCAGAAGA------AGGAACCUUAAAAUCUGUCCAUGACCUUCUUUGGAGAGAGAUGUAGAGUGAAGUGCGGAAAGUUCUGCCGAU-----GAGGGAGACG
((((((((..(------((....)))....)))).))))..(((((.((((((((...((((........)))).....)))).)))).-----)))))..... ( -25.50)
>DroEre_CAF1 52745 96 + 1
AAGCGAGAAGAUUUGCAGGGAGCCUAAAGAUCUGUCCAUGACCUUCUUUGGAUGGAGAUGUGGAGUGAAGUGCGGAAAGUUCUCGAGAA--CGUGAGG------
...((((((..((((((....(((((....((((((((..........))))))))....))).))....))))))...))))))....--(....).------ ( -26.90)
>DroYak_CAF1 43241 98 + 1
AAGCGAGAAGAUUUGCAGGGAGCCCAAAGAUCUGUCCAUGACCUUCUUUGGAUGGAGAUGUAGAGUGAAGUGCGGAAAGUUCUCGAGAUCUCGAGAGG------
..(((......((((((((....)).....((((((((..........))))))))..))))))......)))......(((((((....))))))).------ ( -27.80)
>DroAna_CAF1 52003 85 + 1
AAGAGGG-------GCUG-GUACCUAAAAAUCUGUCCAUGACCUUCUUUGGCCAGAGAUGUAGAGUGAAGUGCGGAAAGUUCUGGCGAA--A---AAG------
..(((((-------..((-(.((..........)))))...)))))(((.(((((((.((((........)))).....))))))).))--)---...------ ( -21.80)
>DroPer_CAF1 59073 93 + 1
AUGGCAGAAGA------AGGAACCUUAAAAUCUGUCCAUGACCUUCUUUGGAGAGAGAUGUAGAGUGAAGUGCGGAAAGUUCUGCCGAU-----GAGGGAGACG
((((((((..(------((....)))....)))).))))..(((((.((((((((...((((........)))).....)))).)))).-----)))))..... ( -25.50)
>consensus
AAGCGAGAAGA___GCAGGGAACCUAAAAAUCUGUCCAUGACCUUCUUUGGAUAGAGAUGUAGAGUGAAGUGCGGAAAGUUCUCGCGAA__C__GAGG______
...((((((............(((((....((((((((..........))))))))....))).)).............))))))................... (-14.94 = -15.11 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:45:07 2006