| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,381,561 – 14,381,668 |
| Length | 107 |
| Max. P | 0.859770 |
| Location | 14,381,561 – 14,381,668 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 78.95 |
| Mean single sequence MFE | -31.82 |
| Consensus MFE | -22.87 |
| Energy contribution | -22.43 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.859770 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14381561 107 - 23771897 UGGAAAAUUUGAAUGAUGUUCAGCGGCAAUAUCAGUUGGCCAAACAGCUGCCCCAGUUGCACGUGGCCGACUCUAUGUAUUCCCUGAACACAG---CCACGCCCACACCG (((......((..((.(((((((.((.(((((.(((((((((..((((((...))))))....)))))))))....)))))))))))))))).---.))...)))..... ( -36.20) >DroVir_CAF1 2855 110 - 1 UGGAGAACCUGAACGAUGCACAGCGUCAAUACCAGCUGGCCAAGCAGCUGCCGCAGCUGCACGUGGCCGAUUCCAUGUACUCGCUGCACACACUGACCAUGCCCAACAAC (((...........(((((...))))).....((((.(((((.(((((((...)))))))...)))))((..........))))))..........)))........... ( -31.80) >DroSim_CAF1 2926 107 - 1 UGGAAAAUUUGAAUGAUGUUCAGCGGCAAUAUCAGUUGGCCAAACAGCUGCCCCAGUUGCACGUGGCCGACUCUAUGUAUUCCCUGAACACAG---CUACGCCCACACCG (((..........((.(((((((.((.(((((.(((((((((..((((((...))))))....)))))))))....))))))))))))))))(---(...)))))..... ( -35.40) >DroEre_CAF1 2931 107 - 1 UGGAAAAUCUGAAUGAUGUGCAGCGGCAAUAUCAGUUGGCCAAACAGCUGCCCCAGCUGCACGUGGCCGACUCAAUGUAUUCCCUGAACACAG---CCACGCCCACACCG .((...(((.....)))(((..(.(((......(((((((((..((((((...))))))....)))))))))...(((.(((...))).))))---)).)...))).)). ( -34.90) >DroWil_CAF1 3056 95 - 1 UUGAGAAUUUGAAUGAUGUCCAGCGGCAAUAUCAAUUGGCCAAACAAUUGCCCCAAUUGCAUGUGGCUGAUUCGAUGUAUUCGUUAAAUACCA---CC------------ .((.(.((((((.(((((((....))))((((((((..((((..((((((...))))))....))))..))).)))))..))))))))).)))---..------------ ( -22.80) >DroAna_CAF1 2654 107 - 1 UGGAGAACCUAAACGAUGUCCAGCGCCAGUACCAGUUGGCCAAGCAGCUGCCCCAGUUGCACGUUGCCGACUCGAUGUACUCUCUGAACACGG---UCACGCCCCCUCAG ..(((.........(.(((.(((.(..(((((.(((((((...(((((((...))))))).....)))))))....)))))).))).))))((---.....))..))).. ( -29.80) >consensus UGGAAAAUCUGAAUGAUGUCCAGCGGCAAUAUCAGUUGGCCAAACAGCUGCCCCAGUUGCACGUGGCCGACUCGAUGUAUUCCCUGAACACAG___CCACGCCCACACCG ................(((.(((.((.(((((.(((((((((..((((((...))))))....)))))))))....)))))))))).))).................... (-22.87 = -22.43 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:44 2006