Locus 5210

Sequence ID 3L_DroMel_CAF1
Location 14,361,889 – 14,361,997
Length 108
Max. P 0.950125
window8243

overview

Window 3

Location 14,361,889 – 14,361,997
Length 108
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 90.62
Mean single sequence MFE -27.01
Consensus MFE -19.78
Energy contribution -19.06
Covariance contribution -0.72
Combinations/Pair 1.20
Mean z-score -2.97
Structure conservation index 0.73
SVM decision value 1.40
SVM RNA-class probability 0.950125
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14361889 108 - 23771897
GUUAAGCACUUUCACCUCGUUAACUGUGGCAUGUUCACAGAGCCAACAGCAUCCACAACUAAUCUGUUGCAAUAACCACUGUAAUAAUGC-UGCAACAUGCCACUGACA
..................((((...((((((((((..(((.((.....))..............(((((((........)))))))...)-)).)))))))))))))). ( -25.00)
>DroSec_CAF1 186052 108 - 1
GUUAAGCACUUUCACCUCGUUAACUGUGGCAUGUUCACAGCGCCAACAGCAUCCACAACUAAUCUGUUGCAAUAACCACUGUAAUAAUGC-UGCAACAUGCCACUGACA
..................((((...((((((((((..((((((.....))..............(((((((........)))))))..))-)).)))))))))))))). ( -28.90)
>DroSim_CAF1 181751 108 - 1
GUUAAGCACUUUCACCUCGUUAACUGUGGCAUGUUCACAGCGCCAACAGCAUCCACAACUAAUCUGUUGCAAUAACCACUGUAAUAAUGG-UGCAACAUGCUACUGACA
..................((((...((((((((((....((((((((((......((((......)))).........)))).....)))-))))))))))))))))). ( -27.26)
>DroEre_CAF1 184693 109 - 1
GUUAAGUACUUUUCCCUCGUUAAAAGUGGCAUGUGCACAGCACCAACUCCAUCCCCAACUAAUCUGUUGCAAUAACCACUGUAAAAAUGGUUGCAACAUGCCACGAACA
..................(((....(((((((((((...................((((......))))....(((((.(.....).))))))).))))))))).))). ( -26.10)
>DroYak_CAF1 192222 109 - 1
GUAAAGCACUUUCACCUCGUUAAAAGUGGCAUGUUCACAGCACCAACUGCAUCCCCAGCUAAUCUGUUGCAAUAACCACUGUAAUAAUGGUUGCAACAUGCCACGAGCC
..................(((....((((((((((....(((.....))).....((((((...(((((((........))))))).)))))).)))))))))).))). ( -27.80)
>consensus
GUUAAGCACUUUCACCUCGUUAACUGUGGCAUGUUCACAGCGCCAACAGCAUCCACAACUAAUCUGUUGCAAUAACCACUGUAAUAAUGG_UGCAACAUGCCACUGACA
..................(((....(((((((((.....................((((......))))..........((((........))))))))))))).))). (-19.78 = -19.06 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:34 2006