Locus 5203

Sequence ID 3L_DroMel_CAF1
Location 14,347,648 – 14,347,749
Length 101
Max. P 0.956296
window8233

overview

Window 3

Location 14,347,648 – 14,347,749
Length 101
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.24
Mean single sequence MFE -25.68
Consensus MFE -20.61
Energy contribution -21.30
Covariance contribution 0.69
Combinations/Pair 1.19
Mean z-score -2.08
Structure conservation index 0.80
SVM decision value 1.46
SVM RNA-class probability 0.956296
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14347648 101 + 23771897
GAUCCGGAUGCCCUUAUUGCACUUUUUGCAGUGUCGCAUUGUGUGGAUCACAAAGUAUUAAUGGAACAGUCUAUUGGAGUAUGUA----UUUACUAAAAAC------UAUA---------
(((((((((((...(((((((.....)))))))..)))))...))))))....(((.((((((((....))))))))((((....----..))))....))------)...--------- ( -25.80)
>DroSec_CAF1 172106 101 + 1
GAUCCGGAUGCCCUUAUUGAACUUUUUGCAGUGUCGCAUUGUGUGGAUCAAAAACUAUUAAUGGAACAGUCUAUUGGAGUAUGUA----UUUACUAAAAAC------GAUA---------
(((((((((((...(((((.........)))))..)))))...))))))........((((((((....))))))))((((....----..))))......------....--------- ( -19.90)
>DroSim_CAF1 173935 101 + 1
GAUCCGGAUGCCCUUAUUGCACUUUUUGCAGUGUCGCAUUGUGUGGAUCACAAAAUAUUAAUGGAACAGUCUAUUGGAGUAUGUA----UUUACUAAAAAC------UAUA---------
(((((((((((...(((((((.....)))))))..)))))...))))))........((((((((....))))))))((((....----..))))......------....--------- ( -25.10)
>DroYak_CAF1 178280 120 + 1
GCACCAGGUGCCCUAAUUGCACUCUUUGCAAUAUCGCAUCGUUCGGAUCACAAUCUAUUAAUGGAGCAAUCCAUUGAAGUAUGUACAUAUAUACCAAACACACACGCUUUAUCCGAAAAU
......(((((....((((((.....))))))...))))).(((((((.........((((((((....)))))))).((((((....))))))................)))))))... ( -31.90)
>consensus
GAUCCGGAUGCCCUUAUUGCACUUUUUGCAGUGUCGCAUUGUGUGGAUCACAAACUAUUAAUGGAACAGUCUAUUGGAGUAUGUA____UUUACUAAAAAC______UAUA_________
(((((((((((...(((((((.....)))))))..)))))...))))))........((((((((....))))))))........................................... (-20.61 = -21.30 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:25 2006