Locus 5201

Sequence ID 3L_DroMel_CAF1
Location 14,339,584 – 14,339,674
Length 90
Max. P 0.732862
window8231

overview

Window 1

Location 14,339,584 – 14,339,674
Length 90
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 81.44
Mean single sequence MFE -12.22
Consensus MFE -9.05
Energy contribution -9.05
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.63
Structure conservation index 0.74
SVM decision value 0.43
SVM RNA-class probability 0.732862
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14339584 90 - 23771897
-----UACCCUCCUGCCCCUA-UGGAAAUUAUUUUCAUAUUUUUC--------UCCUCCACCCCCUUUUAUUAUUUAUUUGCGCUGGC-CGCGCAUAAUUUUGUC
-----..............((-(((((.....)))))))......--------..........................(((((....-.))))).......... ( -10.50)
>DroSec_CAF1 164152 95 - 1
CCCGUUACCCCCCCGCACCAA-UGGAAAUUAUUUUCAUAUUUUUC--------UCCUCCACCCUCUUUUAUUAUUUAUGUGCGCUGGC-CGCGCAUAAUUCUAUC
....................(-(((((.....)))))).......--------.....................(((((((((.....-)))))))))....... ( -12.60)
>DroSim_CAF1 165914 95 - 1
CCCGUUACCCCACUGCACCAA-UGGAAAUUAUUUUCAUAUUUUUC--------UCCUCCACCCCCUUUUAUUAUUUAUUUGCGCUGGC-CGCGCAUAAUUCCGUC
....................(-(((((..(((....)))......--------..........................(((((....-.)))))...)))))). (  -9.90)
>DroEre_CAF1 164883 91 - 1
-----CAGCCCCCAACCUGCUUUGGAAAUUAUUUUCAUAUUUUAC--------UCCUCCACCCCCUUUUAUUAUUUAUUUGCGCUGGC-CGCGCAUAAUUCUGGC
-----..(((.((((......))))....................--------..........................(((((....-.))))).......))) ( -13.00)
>DroYak_CAF1 169639 90 - 1
-----UAGCCCCCCACCCGCU-UGGAAAUUAUUUUCAUAUUUUUC--------CCCUCCACCCCCUUUUAUUAUUUAUUUGCGCUGGC-CGCGCAUAAUUCUGGC
-----..(((...........-.(((((.............))))--------).........................(((((....-.))))).......))) ( -13.12)
>DroAna_CAF1 157130 100 - 1
-----CAGCCUUUUCCCCGCUUUCGAAAUUAUUUUCAUAUUUUUUCCUCGACCGCCUCCUUCCCAUUUUAUUAUUUAUUUGCGCUGGCCCGCGCAUAAUUCUGGC
-----..(((........((..((((.....................))))..))........................(((((......))))).......))) ( -14.20)
>consensus
_____UACCCCCCUGCCCCCA_UGGAAAUUAUUUUCAUAUUUUUC________UCCUCCACCCCCUUUUAUUAUUUAUUUGCGCUGGC_CGCGCAUAAUUCUGGC
........................((((....))))...........................................(((((......))))).......... ( -9.05 =  -9.05 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:23 2006