Locus 5200

Sequence ID 3L_DroMel_CAF1
Location 14,338,449 – 14,338,542
Length 93
Max. P 0.595476
window8230

overview

Window 0

Location 14,338,449 – 14,338,542
Length 93
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 81.06
Mean single sequence MFE -26.47
Consensus MFE -17.45
Energy contribution -16.95
Covariance contribution -0.50
Combinations/Pair 1.12
Mean z-score -1.51
Structure conservation index 0.66
SVM decision value 0.12
SVM RNA-class probability 0.595476
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14338449 93 - 23771897
UGCCAUUAGAAUCGAUUUUCGGCCAAAACUUUUCGACAACUGUCAUUAGGCAUUGUUGGAUUAGCCGGUUGAGCGGUGGGCGG---------GUUGUACGAA
...........(((((..((.(((.......((((((((.((((....))))))))))))...((((......)))).))).)---------)..)).))). ( -26.30)
>DroPse_CAF1 160195 81 - 1
UGCCAUUAAAAUCGAUUUUCGGCUAAAACUUUUCGACAACUGUCAUUAGGCAUUGUUGGAUUAGCCGGG-----GGCAGCC---------------CCCAA-
....................((((((.....((((((((.((((....))))))))))))))))))(((-----((...))---------------)))..- ( -27.50)
>DroEre_CAF1 163769 102 - 1
UGCCAUUAGAAUCGAUUUUCGGCCAAAACUUUUCGACAACUGUCAUUAGGCAUUGUUGGAUUAGCCGAUUGUGAGGUGGGCGGGGUUUGCGGGGUGUGCGAA
.((((((.....(((.(..((.((.......((((((((.((((....))))))))))))...(((........))))).))..).)))...)))).))... ( -28.30)
>DroYak_CAF1 168508 93 - 1
UGCCAUUAGAAUCGAUUUUCGGCCAAAACUUUUCGACAACUGUCAUUAGGCAUUGUUGGAUUAGCCGAAUGAACGGUGGGCGG---------GGUGUACGAA
...........(((((.(((.(((.......((((((((.((((....))))))))))))...((((......)))).))).)---------)).)).))). ( -25.60)
>DroAna_CAF1 156000 95 - 1
UGCCAUUAGAAUCGAUUUUAGGCCAAAACUUUUCGACAACUGUCAUUAGGCAUUGUUGGAUUAGCCGGAUGAGAGGUGGAUGGGG-------GUGGGAUGAA
..(((((...(((.(((((...((.......((((((((.((((....))))))))))))......))....))))).)))...)-------))))...... ( -23.62)
>DroPer_CAF1 174579 81 - 1
UGCCAUUAAAAUCGAUUUUCGGCUAAAACUUUUCGACAACUGUCAUUAGGCAUUGUUGGAUUAGCCGGG-----GGCAGCC---------------CCCAA-
....................((((((.....((((((((.((((....))))))))))))))))))(((-----((...))---------------)))..- ( -27.50)
>consensus
UGCCAUUAGAAUCGAUUUUCGGCCAAAACUUUUCGACAACUGUCAUUAGGCAUUGUUGGAUUAGCCGGAUGAG_GGUGGGCGG_________G_UGUACGAA
(((((((......)))..(((((........((((((((.((((....))))))))))))...)))))......))))........................ (-17.45 = -16.95 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:22 2006