Locus 5199

Sequence ID 3L_DroMel_CAF1
Location 14,326,317 – 14,326,413
Length 96
Max. P 0.962609
window8229

overview

Window 9

Location 14,326,317 – 14,326,413
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 91.46
Mean single sequence MFE -17.48
Consensus MFE -13.93
Energy contribution -13.93
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.19
Structure conservation index 0.80
SVM decision value 1.54
SVM RNA-class probability 0.962609
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14326317 96 + 23771897
UCAGCAACAUUCCAUAUGUUGCAUGCCGCACAACCUAGGGCAAAACUUGGUCCACUUCAGAACACUUCAAACCCACAGUGUAACCACAAUAACGCA
...(((((((.....))))))).....((........((((........))))........(((((..........)))))............)). ( -19.40)
>DroSec_CAF1 151175 96 + 1
UCAGCAACAUUCCAUAUGUUGCAUGCCGCACAACCUAGCGCAAAACUUGGUCCACUUCAGAACACUUUAAAGCCACAGUGUUACCACAAUAACGCA
...(((((((.....))))))).(((.((........))))).....((((....................))))..((((((......)))))). ( -18.85)
>DroSim_CAF1 152658 96 + 1
UCAGCAACAUUCCAUAUGUUGCAUGCCGCACAACCUAGCGCAAAACUUGGUCCACUUCAGAACACUUCAAAGCCACAGUGUUACCACAAUAACGCA
...(((((((.....))))))).(((.((........))))).....((((....................))))..((((((......)))))). ( -18.85)
>DroEre_CAF1 151404 96 + 1
UCAGCAACAUUCCAUAUGUUGCAUGCCACACAAACUAGCGCAGAACUUGGUCCACUUCAGAGCACUUCAUACCCACAGUGAAACCAGCAUAACACA
...(((((((.....)))))))((((...........((...(((..........)))...))..(((((.......)))))....))))...... ( -15.60)
>DroYak_CAF1 156052 95 + 1
UCAGCAACAUUCCAUAUGUUGCAUGCCACACAAACUAGCGCAGAACUUGGUCCACUUCAGAACAC-UCAUACCCACAGUGAAACCACCGCAACACA
...(((((((.....)))))))...............(((......((((......))))..(((-(.........)))).......)))...... ( -14.70)
>consensus
UCAGCAACAUUCCAUAUGUUGCAUGCCGCACAACCUAGCGCAAAACUUGGUCCACUUCAGAACACUUCAAACCCACAGUGUAACCACAAUAACGCA
...(((((((.....))))))).((((..........).))).....((((.((((....................))))..)))).......... (-13.93 = -13.93 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:21 2006