Locus 5197

Sequence ID 3L_DroMel_CAF1
Location 14,325,004 – 14,325,095
Length 91
Max. P 0.795083
window8227

overview

Window 7

Location 14,325,004 – 14,325,095
Length 91
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 81.24
Mean single sequence MFE -21.87
Consensus MFE -15.32
Energy contribution -15.58
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.85
Structure conservation index 0.70
SVM decision value 0.60
SVM RNA-class probability 0.795083
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14325004 91 - 23771897
--GCCCCCUUAACAUUUUCCUGGCGCACGUGCUGCGGAAAUGAGUUUUGUGUAUUUCACUUUCCAUUUUCCGCGUCUUCUUC------------UACUCCG---UGCU
--(((................)))(((((....(((((((.(((....(((.....))).)))...)))))))((.......------------.))..))---))). ( -21.09)
>DroSec_CAF1 149870 91 - 1
--GCCCCCUUAACAUUUUCCUGGCGCACGUGCUGCGGAAAUGAGUUUUGUGUAUUUCACUUUCCAUUUUCCGCGUCUUCUUC------------CACUCCG---UGCU
--(((................)))(((((....(((((((.(((....(((.....))).)))...)))))))((.......------------.))..))---))). ( -21.19)
>DroSim_CAF1 151353 91 - 1
--GCCCCCUUAACAUUUUCCUGGCGCACGUGCUGCGGAAAUGAGUUUUGUGUAUUUCACUUUCCAUUUUCCGCGUCUUCUUC------------CACUCCG---UGCU
--(((................)))(((((....(((((((.(((....(((.....))).)))...)))))))((.......------------.))..))---))). ( -21.19)
>DroAna_CAF1 143394 101 - 1
GGGCACCC-------CUUGCCGCCGCACGUGCUGCGGAAAUGAGUUUUGUGUAUUUCACUUUCCAUUUUCCGCGCCCGCCUCAAACUCUCCGCCUCCUUCGUCCUCCU
((((....-------...((((.....)).)).(((((((.(((....(((.....))).)))...)))))))))))............................... ( -24.00)
>consensus
__GCCCCCUUAACAUUUUCCUGGCGCACGUGCUGCGGAAAUGAGUUUUGUGUAUUUCACUUUCCAUUUUCCGCGUCUUCUUC____________CACUCCG___UGCU
.....................(((((....)).(((((((.(((....(((.....))).)))...))))))))))................................ (-15.32 = -15.58 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:19 2006