Locus 5192

Sequence ID 3L_DroMel_CAF1
Location 14,300,978 – 14,301,072
Length 94
Max. P 0.512961
window8220

overview

Window 0

Location 14,300,978 – 14,301,072
Length 94
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 98.58
Mean single sequence MFE -14.23
Consensus MFE -13.13
Energy contribution -13.47
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.92
SVM decision value -0.04
SVM RNA-class probability 0.512961
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14300978 94 + 23771897
GCAAUCAGCAAGUACAACAACCAACAACGACAACUUGAACCAAUAGGAAACAGCACAAACAACACUUUGCAUGUGUAGCCGAGGUUCCCCAAAC
((.....))...........................(((((....(....).(((((..(((....)))..)))))......)))))....... ( -14.70)
>DroSec_CAF1 125807 94 + 1
GCAAUCAGCAACUACAACAACCAACAACGACAACUUGAACCAAUAGGAAACAGCACAAACAACACUUUGCAUGUGUAGCCGAGGUUCCCCAAAC
((.....))...........................(((((....(....).(((((..(((....)))..)))))......)))))....... ( -14.70)
>DroEre_CAF1 126095 94 + 1
GCAAUCAGCAACUACAACAACCAACAACGACAACUUCAACCAAUAGGAAACAGCACAAACAACACUUUGCAUGUGUAGCCGAGGUUCCCCAAAC
((.....))......................((((((........(....).(((((..(((....)))..)))))....))))))........ ( -13.30)
>consensus
GCAAUCAGCAACUACAACAACCAACAACGACAACUUGAACCAAUAGGAAACAGCACAAACAACACUUUGCAUGUGUAGCCGAGGUUCCCCAAAC
((.....))...........................(((((....(....).(((((..(((....)))..)))))......)))))....... (-13.13 = -13.47 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:44:13 2006