Locus 5162

Sequence ID 3L_DroMel_CAF1
Location 14,181,282 – 14,181,387
Length 105
Max. P 0.879673
window8166

overview

Window 6

Location 14,181,282 – 14,181,387
Length 105
Sequences 6
Columns 113
Reading direction forward
Mean pairwise identity 78.27
Mean single sequence MFE -22.52
Consensus MFE -13.90
Energy contribution -15.12
Covariance contribution 1.22
Combinations/Pair 1.38
Mean z-score -1.92
Structure conservation index 0.62
SVM decision value 0.91
SVM RNA-class probability 0.879673
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14181282 105 + 23771897
AAUAGCAGCAAUUUC-AACCCAUUU--GGGUUAAACGCUUUC-----GUAAAUGCCUUUGAGUAUUUAAUUCCGUUUUUACUUUGGUAUACUUUAAGGAGCAUUUGCAUUAAU
......(((..(((.-(((((....--)))))))).)))...-----((((((((((((((((((......(((.........))).)))).)))))).))))))))...... ( -25.10)
>DroSec_CAF1 15571 90 + 1
AAUCGCAGCAAUUUC-AACC-----------------CUUUC-----GUAAAUGCCUUUGAGUAUUUAAUUCCGUUUUUACUUCGGUAUACUUUAAAGAGCAUUUGCAUUAAU
...............-....-----------------.....-----((((((((((((((((((......(((.........))).)))).)))))).))))))))...... ( -19.30)
>DroSim_CAF1 15618 105 + 1
AAUCGCAGCAAUUUC-AGCCCAUUU--GGGUUAAACGCUUUC-----GUAAAUGCCUUUGAGUAUUUAAUUCCGUUUUUACUUCGGUAUACUUUAAGGAGCAUUUGCAUUAAU
......(((..(((.-(((((....--)))))))).)))...-----((((((((((((((((((......(((.........))).)))).)))))).))))))))...... ( -26.50)
>DroEre_CAF1 16391 105 + 1
AAUCGCAGCAAUUUC-AACCGAUUU--GGGUUAAACGCUUUC-----GUAAAUGCCUUUGAGUAUUUAAUUCCGUUUUUACUUUGGUAUACUUUAAGGAGCAUUUGCAUUAAU
......(((..(((.-((((.....--.))))))).)))...-----((((((((((((((((((......(((.........))).)))).)))))).))))))))...... ( -21.80)
>DroYak_CAF1 18077 105 + 1
AAUCGCAGCAAUUUC-AGCCCAUUU--GGGUUAAACGCUUUC-----GUCAAUGCCUUUGAGCAUUUAAUUCAGUUUUUACUUUGGAGCAUUUUAAGGAGCAUUUGCAUUAAU
......(((..(((.-(((((....--)))))))).)))...-----((.((((((((((((.......(((((........)))))....))))))).))))).))...... ( -20.40)
>DroAna_CAF1 15287 104 + 1
AAUCAAAAAAUUGUUGCCCCCAUUUUAGGGCUAAACGGUUCCUCUUUUCAAAAGUCUUCAAGUAUUUAGACU---------CUCGGUCUACUUUGAGGCGCAUUUGCAUUAAU
........(((((((((((........))))..))))))).............(((((.((((....((((.---------....)))))))).)))))((....))...... ( -22.00)
>consensus
AAUCGCAGCAAUUUC_AACCCAUUU__GGGUUAAACGCUUUC_____GUAAAUGCCUUUGAGUAUUUAAUUCCGUUUUUACUUCGGUAUACUUUAAGGAGCAUUUGCAUUAAU
................(((((......)))))...............((((((((((((((((((......(((.........))).)))).)))))).))))))))...... (-13.90 = -15.12 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:43:22 2006