Locus 5147

Sequence ID 3L_DroMel_CAF1
Location 14,144,319 – 14,144,415
Length 96
Max. P 0.829953
window8142

overview

Window 2

Location 14,144,319 – 14,144,415
Length 96
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 96.09
Mean single sequence MFE -19.74
Consensus MFE -17.52
Energy contribution -17.44
Covariance contribution -0.08
Combinations/Pair 1.08
Mean z-score -1.42
Structure conservation index 0.89
SVM decision value 0.71
SVM RNA-class probability 0.829953
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14144319 96 + 23771897
GUUCGCAACGUUUCCGUUGUGUCUGCUUUCCCC-AAA-AAAGGAAGAAAGGACAACGUAGAACGGCAACAACAACGAAUCUCAAAUAAUAAUGAAAGC
((((((((((....))))))((((..(((((..-...-...)))))...))))......))))(....)............................. ( -20.20)
>DroSec_CAF1 142122 96 + 1
GUUCGCAACGUUUCCUUUGUGUCUGCUUUCCCC-AAA-AAAGGAAGAAAGGACAGCGAAGAACGGCAACAACAACGAAUCUCAAAUAAUAAUGAAAGC
(((((....(((..((((((((((..(((((..-...-...)))))...))))).))))))))(....).....)))))................... ( -19.00)
>DroSim_CAF1 145389 96 + 1
GUUCGCAACGUUUCCUUUGUGUCUGCUUUCCCC-AAA-AAAGGAAGAAAGGACAACGAAGAACGGCAACAACAACGAAUCUCAAAUAAUAAUGAAAGC
(((((....(((..((((((((((..(((((..-...-...)))))...)))).)))))))))(....).....)))))................... ( -19.00)
>DroEre_CAF1 141603 97 + 1
GCUCGCAACGUUUCCUUUGUGUCUGCUUUCCCCCAAA-AAAGGAAGAAAGGACAACGAAGAACGGCAGCAACAACGAAUCUCAAAUAAUAAUGAAAGC
(((.((..((((..(((((((((..(((((..((...-...))..)))))))).)))))))))))))))............................. ( -21.00)
>DroYak_CAF1 149094 98 + 1
GUUCGCUACGUUUCCUUUGUGUCUGCUUUCCCCCAAAAAAAGGAAGAAAGGACAACGAAGAACGGCAACAAAAACGAAUCUCAAAUAAUAAUGAAAGC
....(((.(((((.(((((((((..(((((..((.......))..)))))))).))))))...(....)..)))))....(((........))).))) ( -19.50)
>consensus
GUUCGCAACGUUUCCUUUGUGUCUGCUUUCCCC_AAA_AAAGGAAGAAAGGACAACGAAGAACGGCAACAACAACGAAUCUCAAAUAAUAAUGAAAGC
(((.((..((((..((((((((((..(((((..........)))))...)))).)))))))))))))))............................. (-17.52 = -17.44 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:59 2006