Locus 5138

Sequence ID 3L_DroMel_CAF1
Location 14,122,400 – 14,122,516
Length 116
Max. P 0.508890
window8131

overview

Window 1

Location 14,122,400 – 14,122,516
Length 116
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 96.21
Mean single sequence MFE -24.62
Consensus MFE -22.73
Energy contribution -23.23
Covariance contribution 0.50
Combinations/Pair 1.03
Mean z-score -0.91
Structure conservation index 0.92
SVM decision value -0.05
SVM RNA-class probability 0.508890
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14122400 116 + 23771897
---UAUGUGCAACAAUUUGACCGCAGUUGCGGCACAUUUGAACCCAAAUUACUUGAGAUAAAUGCGUACUUAAUUUGCAAGACUUUUGAGUGGUGGUAUCAAAAUAAUAAUCAAUGUUC
---..(((((..(((((.......)))))..)))))(((((..(((...((((..(((....((((.........))))....)))..)))).)))..)))))................ ( -25.90)
>DroPse_CAF1 136862 116 + 1
---UAUGUGCAACAAUUUGACCGCAGUUGCGGCAUAUUUGAACCCAAAUUACUUCAGAUAAAUGCGUACUUAAUUUGCAAGACUUUUGAGUGGUGGUAUCAAAAUAAUAAUCAAUGUUC
---.......((((..((((((((....))))....(((((..(((...((((.((((....((((.........)))).....)))))))).)))..))))).......)))))))). ( -22.30)
>DroEre_CAF1 119750 119 + 1
GAGUAUGUGCAACAAUUUGACCGCAGUUGCGGCACAUUUGAACCCAAAUUACUUGAGAUAAAUGCGUACUUAAUUUGCUAGACUUUUGAGUGGUGGUAUCAAAAUAAUAAUCAAUGUUU
((...(((((..(((((.......)))))..)))))(((((..(((...((((..(((.....(((.........))).....)))..)))).)))..))))).......))....... ( -25.10)
>DroYak_CAF1 125226 119 + 1
UCGUAUAUGCAACAAUUUGACCGCAGUUGCGGCACAUUUGAACCCAAAUUACUUGAGAUAAAUGCGUACUUAAUUUGCAAGACUUUUGAGUGGUGGUAUCAAAAUAAUAAUCAAUGUAC
..((((((.........((.((((....))))))..(((((..(((...((((..(((....((((.........))))....)))..)))).)))..)))))..........)))))) ( -26.20)
>DroAna_CAF1 120797 116 + 1
---UAUGUGCAACAAUUUGACCGCAGUUGCGGCACAUUUGAACCCAAAUUACUUGAGAUAAAUGCGUACUUAAUUUGCAAGACUUUUGAGUGGUGGUAUCAAAAUAAUAAUCAAAGUUC
---..(((((..(((((.......)))))..)))))(((((..(((...((((..(((....((((.........))))....)))..)))).)))..)))))................ ( -25.90)
>DroPer_CAF1 138128 116 + 1
---UAUGUGCAACAAUUUGACCGCAGUUGCGGCAUAUUUGAACCCAAAUUACUUCAGAUAAAUGCGUACUUAAUUUGCAAGACUUUUGAGUGGUGGUAUCAAAAUAAUAAUCAAUGUUC
---.......((((..((((((((....))))....(((((..(((...((((.((((....((((.........)))).....)))))))).)))..))))).......)))))))). ( -22.30)
>consensus
___UAUGUGCAACAAUUUGACCGCAGUUGCGGCACAUUUGAACCCAAAUUACUUGAGAUAAAUGCGUACUUAAUUUGCAAGACUUUUGAGUGGUGGUAUCAAAAUAAUAAUCAAUGUUC
.....(((((..(((((.......)))))..)))))(((((..(((...(((((((((....((((.........))))....))))))))).)))..)))))................ (-22.73 = -23.23 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:48 2006