Locus 5134

Sequence ID 3L_DroMel_CAF1
Location 14,118,827 – 14,118,921
Length 94
Max. P 0.961150
window8127

overview

Window 7

Location 14,118,827 – 14,118,921
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 77.76
Mean single sequence MFE -30.55
Consensus MFE -17.97
Energy contribution -19.42
Covariance contribution 1.45
Combinations/Pair 1.08
Mean z-score -2.38
Structure conservation index 0.59
SVM decision value 1.52
SVM RNA-class probability 0.961150
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14118827 94 - 23771897
CGAUUAGCGCUUCUUCUGGCUGAUUUCUUGGCUUG-CCUCUCGGGCUCUGUGAAAAUUCCAUGGAAAUUUCACACAUCCUUGCGAGGGCGGGGAU
.(((((((.(.......))))))))......((((-((.((((((...(((((((.(((....))).)))))))...))...))))))))))... ( -31.20)
>DroPse_CAF1 133263 95 - 1
CGAUUAGCGCUUGUGCGCGCUGAUUUCUCAGUCGGGUCUCUGUCUCUCUGUGAAAAUUCUAUGGAAAUUUCACACAUUUGUGCGAGGGCGGGGAU
.(((((((((......)))))))))..........(((((((((.(((.((((((.(((....))).))))))((....))..)))))))))))) ( -34.50)
>DroEre_CAF1 116229 79 - 1
CGAUUAGCGCUUCUUCUAGCUGAUUUCUUCA----------------CUGUGAAAAUUCCAUGGAAAAUUCACACAUCCUUGCGAGGGCGGGGAU
.(((((((..........)))))))......----------------.((((((..(((....)))..)))))).((((((((....)))))))) ( -23.40)
>DroYak_CAF1 121222 95 - 1
CGAUUAGCGCUUCUUCUGGCUGAUUUCUUCGCUUGGCCUUUGGGUCUCUGUGAAAAUUCCAUGGAAAUUUCACACAUCCUUGCGAGGGCGGAGAU
.(((((((.(.......))))))))(((((((((.((....((((...(((((((.(((....))).))))))).))))..))..))))))))). ( -32.80)
>DroAna_CAF1 117619 81 - 1
CGAUUAGCGCAACUCC------------UCGCUCG-CCUUUCG-CCUCUGUGAAAAUUCCUUGGAAAUUUCACACAUCCUUGCGAGGGCGGGGAU
.............(((------------((((((.-....(((-(...(((((((.(((....))).))))))).......))))))))))))). ( -26.90)
>DroPer_CAF1 134553 95 - 1
CGAUUAGCGCUUGUGCGCGCUGAUUUCUCAGUCCGGUCUCUGUCUCUCUGUGAAAAUUCUAUGGAAAUUUCACACAUUUGUGCGAGGGCGGGGAU
.(((((((((......)))))))))..........(((((((((.(((.((((((.(((....))).))))))((....))..)))))))))))) ( -34.50)
>consensus
CGAUUAGCGCUUCUUCUCGCUGAUUUCUUCGCUCG_CCUCUGG_UCUCUGUGAAAAUUCCAUGGAAAUUUCACACAUCCUUGCGAGGGCGGGGAU
.(((((((..........))))))).......................(((((((.(((....))).))))))).((((((((....)))))))) (-17.97 = -19.42 +   1.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:44 2006