Locus 5125

Sequence ID	3L_DroMel_CAF1
Location	14,088,372 – 14,088,464
Length	92
Max. P	0.946128

overview

Window 5

Location	14,088,372 – 14,088,464
Length	92
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	92.66
Mean single sequence MFE	-27.78
Consensus MFE	-23.26
Energy contribution	-24.34
Covariance contribution	1.08
Combinations/Pair	1.12
Mean z-score	-1.80
Structure conservation index	0.84
SVM decision value	1.36
SVM RNA-class probability	0.946128
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 14088372 92 - 23771897
UCGCUCGUCCUCUCGUUUUCAGUAAUAUUUGCUGUCAGUUGCAGUCUUUGUUAAGUUUGUUUAGAGCGGGUGGAAUAUCGAGGGGGCGGUGG-
.(((.((((((((((.(((((.(((((...(((((.....)))))...))))).((((.....))))...)))))...))))))))))))).- ( -32.20)
>DroSec_CAF1 86714 84 - 1
UCGCUCGUCCUCUCUUUUUCAGUAAUAUUUGCUGUCAGUUGCAGUCUUUGUUAAGUUUGUUUAGAGCGGAUGGAAUAUCGAGGG---------
....((((((.((((....((((((((...(((((.....)))))...)))))...)))...)))).))))))...........--------- ( -19.00)
>DroSim_CAF1 88214 92 - 1
UCGCUCGUCCUCUCUUUUUCAGUAAUAUUUGCUGUCAGUUGCAGUCUUUGUUAAGUUUGUUUAGAGCGGGUGGAAUAUCGAGGGGGCGGUGG-
.(((.(((((((((..(((((.(((((...(((((.....)))))...))))).((((.....))))...)))))....)))))))))))).- ( -28.80)
>DroEre_CAF1 84877 93 - 1
UCGCUCGUCCUCUCGCUUUCAGUAAUAUUUGCUGUCAGUUGCAGUCUUUGUUAAGUUUGUUUAGAGCGGGCGGAAUAUCGAGGGGGUGGUGGU
((((.(..(((((((..(((..(((((...(((((.....)))))...))))).((((((.....)))))).)))...)))))))..))))). ( -29.60)
>DroYak_CAF1 89636 93 - 1
UCGCUCGUCCUCUCGCUUUCAGUAAUAUUUGCUGUCAGUUGCAGUCUUUGUUAAGUUUGUUUAGAGCGGGCGGAGUAUCGAGGGGGUGGUGGU
((((.(..(((((((..(((..(((((...(((((.....)))))...))))).((((((.....)))))).)))...)))))))..))))). ( -29.30)
>consensus
UCGCUCGUCCUCUCGUUUUCAGUAAUAUUUGCUGUCAGUUGCAGUCUUUGUUAAGUUUGUUUAGAGCGGGUGGAAUAUCGAGGGGGCGGUGG_
.(((.((((((((((..(((..(((((...(((((.....)))))...))))).((((((.....)))))).)))...))))))))))))).. (-23.26 = -24.34 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:33 2006