| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 14,059,225 – 14,059,320 |
| Length | 95 |
| Max. P | 0.731275 |
| Location | 14,059,225 – 14,059,320 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 84.43 |
| Mean single sequence MFE | -27.33 |
| Consensus MFE | -22.25 |
| Energy contribution | -22.25 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.731275 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 14059225 95 + 23771897 --------------------A---AAGCUCGACAACGGAAAGUGUGAUUAUAUUUUCAUUUUCAAUUUUUUACGGCCAAUUAAUUUGGCAAUUGACGCUUCGCUGGGCGUCUGCGCUA --------------------.---.(((.((......(((((((.((......)).)))))))...........(((((.....)))))....((((((......)))))))).))). ( -24.50) >DroVir_CAF1 56507 102 + 1 -------------AAGCCCGA---CAGCUUCACAACGGAAAGUGUGAUUAUAUUUUCAUUUUCAAUUUUUUACGGCCAAUUAAUUUGGCAAUUGACGCUUCGCUGGGCGUCUGCGACA -------------..(((((.---((((.(((.....(((((((.((......)).)))))))...........(((((.....)))))...))).)))..).)))))(((...))). ( -27.10) >DroGri_CAF1 54956 101 + 1 --------------UCCCCGU---CACUUUCCCAACGGAAAGUGUGAUUAUAUUUUCAUUUUCAAUUUUUUACGGCCAAUUAAUUUGGCAAUUGACGCUUCGCUGGGCGUCUGCGACA --------------.....((---((((((((....)))))))((((........))))...............(((((.....)))))....((((((......))))))...))). ( -27.80) >DroWil_CAF1 73066 98 + 1 --------------------AGCCAACAGUGACAACGGAAAGUGUGAUUAUAUUUUCAUUUUCAAUUUUUUACGGCCAAUUAAUUUGGCAAUUGACGCUUCGCUGGGCGUCUGCGCCC --------------------......((((((...(((((((((.((......)).)))))))...........(((((.....)))))......))..))))))((((....)))). ( -28.20) >DroMoj_CAF1 63317 115 + 1 AGAGCCAGAGCCACAGCCCGA---UAGCUUGACAACGGAAAGUGUGAUUAUAUUUUCAUUUUCAAUUUUUUACGGCCAAUUAAUUUGGCAAUUGACGCUUCGCUGGGCGUCUGCGACC ...((.((((((.((((..((---.(((((((.....((((((((....))))))))....)))).........(((((.....))))).......)))))))))))).))))).... ( -32.50) >DroAna_CAF1 58296 94 + 1 --------------------U---GA-CUCGAAAACGGAAAGUGUGAUUAUAUUUUCAUUUUCAAUUUUUUACGGCCAAUUAAUUUGGCAAUUGACGCUUCGCUGGGCGUCUGCGCUU --------------------.---..-...(((((..((((((((....)))))))).))))).........(((((((.....)))))....((((((......))))))..))... ( -23.90) >consensus ____________________A___AAGCUUGACAACGGAAAGUGUGAUUAUAUUUUCAUUUUCAAUUUUUUACGGCCAAUUAAUUUGGCAAUUGACGCUUCGCUGGGCGUCUGCGACA .....................................(((((((.((......)).))))))).........(((((((.....)))))....((((((......))))))..))... (-22.25 = -22.25 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:42:23 2006