Locus 510

Sequence ID 3L_DroMel_CAF1
Location 1,507,593 – 1,507,698
Length 105
Max. P 0.522230
window765

overview

Window 5

Location 1,507,593 – 1,507,698
Length 105
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 80.07
Mean single sequence MFE -28.93
Consensus MFE -18.09
Energy contribution -17.90
Covariance contribution -0.19
Combinations/Pair 1.24
Mean z-score -1.44
Structure conservation index 0.63
SVM decision value -0.02
SVM RNA-class probability 0.522230
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1507593 105 + 23771897
AGGGCAAGAAGCCAAACUUGCCCAAAAUGGCUUCCUGGAAGAACAGCAUUCUGUCUGAUCUGCUCUCCUCGGGAAACUCUGCA--AUCAUAGUUCAAGUUUA--AACAC
.(((((((........))))))).....((.(((((((.(((.(((...((.....)).))).))).).)))))).)).....--.................--..... ( -25.50)
>DroPse_CAF1 16084 107 + 1
AGGGCAGAAAUCCAAACUUGGCCAAGAUGGCUUCUUGAAGGAACAGCAUGCGAUCGGAUCUGCUUUCCUCGGGGAAUUCUGCGGAAAAACAUUUCAUGACGA--UAUCA
...((((((.(((......((((.....))))..((((.((((.((((..(.....)...))))))))))))))).)))))).((((....)))).......--..... ( -27.50)
>DroSec_CAF1 12625 105 + 1
AGGGCAAGAAGCCAAACUUGCCCAGUAUGGCUUCCUGGAAGAACAGCAUUCUGUCGGAUCUGCUCUCCUCGGGAAACUCUGCA--AUCAUAGAUCAAGUUUA--AACAC
.(((((((........))))))).(((.((.(((((((.(((.(((.((((....))))))).))).).)))))).)).))).--.................--..... ( -31.60)
>DroEre_CAF1 14192 107 + 1
AGGGCAGGAAUCCAAACUUGCCCAAAAUGGCUUCCUGGAAGAACAGCAUUCUGUCUGAUCUGCUUUCCUCGGGGAAUUCUGCA--AUCAUAAUUCACAGUCAAUAACGA
.(((((((........)))))))....(((((.(((((..(((.((((.((.....))..))))))).)))))(((((.((..--..)).)))))..)))))....... ( -28.80)
>DroYak_CAF1 12435 105 + 1
AGGGCAGGAAUCCAAACUUGCCCAAAAUGGCUUCCUGGAGGAACAGCAUUCUGUCUGCUCUGCUUUCCUCGGGGAAUUCUGCA--AUCAUAAAUC--AGUCAAUAAAGA
.(((((((........)))))))....(((((((((.((((((.((((............)))))))))).))))........--..........--)))))....... ( -32.66)
>DroPer_CAF1 15136 107 + 1
AGGGCAGAAAUCCAAACUUGGCCAAGAUGGCUUCUUGAAGGAACAGCAUGCGAUCGGAUCUGCUUUCCUCGGGGAAUUCUGCGGAAAAACAUUUCAUGACGA--UCUCA
...((((((.(((......((((.....))))..((((.((((.((((..(.....)...))))))))))))))).)))))).((((....)))).......--..... ( -27.50)
>consensus
AGGGCAGGAAUCCAAACUUGCCCAAAAUGGCUUCCUGGAAGAACAGCAUUCUGUCGGAUCUGCUUUCCUCGGGGAAUUCUGCA__AUCAUAAUUCAAGAUCA__AACAA
.(((((((........)))))))......(((((((((.(((.(((.(((......)))))).)))..))))))).....))........................... (-18.09 = -17.90 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:43:52 2006