Locus 5093

Sequence ID 3L_DroMel_CAF1
Location 13,971,318 – 13,971,415
Length 97
Max. P 0.696448
window8068

overview

Window 8

Location 13,971,318 – 13,971,415
Length 97
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 72.49
Mean single sequence MFE -24.94
Consensus MFE -16.78
Energy contribution -17.02
Covariance contribution 0.24
Combinations/Pair 1.06
Mean z-score -1.30
Structure conservation index 0.67
SVM decision value 0.34
SVM RNA-class probability 0.696448
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13971318 97 + 23771897
CAGAAA----------AACAAGAA----GAA-GAA---AACUACUAGCGAUGAAUGCCGCGCCGGAUGCCAAGGCGAAAUUAGUGCAUUCACUUUUCGCUCCGCUUUGCUUUUUU
......----------.....(((----(((-(..---.......(((((((((((((.((((.........))))......).)))))))....)))))........))))))) ( -23.33)
>DroVir_CAF1 7529 98 + 1
UAACAAUGCAGCGGCGAGUAAGAC----GAC-GAUGUCGUCGACU-GCCGUGAAUGCCGCGCCGGGUGCCAAGGCAAAAUUAGUGCAUUCACUUUUUGCUUUG----G-------
...(((.((((.(((.(((..(((----(((-...)))))).)))-)))((((((((.((......(((....)))......))))))))))...)))).)))----.------- ( -37.50)
>DroSec_CAF1 8582 102 + 1
CAGCAA----------AACAAGAAAGAAAAAAAAA---AACUACUAGCGAUGAAUGCCGCGCCGGAUGCCAAGGCGAAAUUAGUGCAUUCACUUUUCGCUCUGCUUUGCUUUUUU
.(((((----------(...(((.((.........---..))....((((((((((((.((((.........))))......).)))))))....)))))))..))))))..... ( -23.00)
>DroSim_CAF1 8167 101 + 1
CAGAAA----------AACAAGAAAGAAAAA-AAA---AACUACUAGCGAUGAAUGCCGCGCCGGAUGCCAAGGCGAAAUUAGUGCAUUCACUUUUCGCUCUGCUUUGCUUUUUU
.(((((----------(.((((..(((....-...---........((((((((((((.((((.........))))......).)))))))....)))))))..)))).)))))) ( -21.46)
>DroEre_CAF1 9035 74 + 1
AAGAA----------------------------------ACAACUAGCGAUGAAUGCCGCGCCGGAUGCCAAGGCGAAAUUAGUGCAUUCACUUUUCGCUCUGCUUUG-------
.....----------------------------------......(((((((((((((.((((.........))))......).)))))))....)))))........------- ( -19.40)
>consensus
CAGAAA__________AACAAGAA____AAA_AAA___AACUACUAGCGAUGAAUGCCGCGCCGGAUGCCAAGGCGAAAUUAGUGCAUUCACUUUUCGCUCUGCUUUGCUUUUUU
..............................................((((((((((((.((((.........))))......).)))))))....))))................ (-16.78 = -17.02 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:47 2006