| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,955,753 – 13,955,872 |
| Length | 119 |
| Max. P | 0.618703 |
| Location | 13,955,753 – 13,955,872 |
|---|---|
| Length | 119 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.93 |
| Mean single sequence MFE | -31.90 |
| Consensus MFE | -24.28 |
| Energy contribution | -24.23 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.72 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.618703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13955753 119 - 23771897 UUUCUUUGGAGUGAGCAAACUUUUAGUUUCCCUGCCCUCAGCCACUUUUUGCCGCACCGAAGGAAUGGAAAAUAAAUUGCCCUCGAGAAAAUGCAAAUUGUUUUUCAAAUUAUACAU-CC (((((((((.(((.(((((.....(((....(((....)))..))).)))))))).)))))))))((((((((((.((((............)))).))))))))))..........-.. ( -28.40) >DroSec_CAF1 11262 119 - 1 UUUCUUUGGAGUGCGGAAACUUUUAGUUUCCCUGCUCUCUGCCACUUUUUGCCGCUCCGAAGGAAUGGAAAAUGAAUUGCCCUCGAGGAAAUGCAAAUUGUUUUUCAAAUUAUACAU-CC ((((((((((((((((((((.....))))))..((.....))........).)))))))))))))(((((((..(.((((((....))....)))).)..)))))))..........-.. ( -36.60) >DroSim_CAF1 11376 119 - 1 UUUCUUUGGAGUGCGGAAACUUUUAGUUUCCCUGCUCUCUGCCACUUUUUGCCGCUCCGAAGGAAUGGAAAAUGAAUUGCCCUCGAGGAAAUGCAAAUUGUUUUUCAAAUUAUACAU-CC ((((((((((((((((((((.....))))))..((.....))........).)))))))))))))(((((((..(.((((((....))....)))).)..)))))))..........-.. ( -36.60) >DroEre_CAF1 11558 119 - 1 UUUCUUUGGAGUGCGGAAACUUUUAGUUUCCCUGCUCUCUGCCACUUUUUGCGGCUUCGAAGAAAUGGAAAAUAAAUUGCCUCCGAGGAAAUGCAAAUUGUUUUUCAAAUUAUACAU-CC (((((((((((((.((((((.....)))))).)))))...(((.(.....).)))..))))))))((((((((((.((((.((....))...)))).))))))))))..........-.. ( -36.60) >DroYak_CAF1 11903 119 - 1 UUUCUUGGGAGUGCGGAAACUUUUAGUUUCCCUGCUCUCUGCCACUUUUUGCCGCACCGAAGGAAUGGAAAAUAAAUUGCCCUCGAGGAAAUGCAAAUUGUUUUUCAAAUUAUACAU-CC (((((((((((((.((((((.....)))))).)))))))(((..(.....)..)))...))))))((((((((((.((((((....))....)))).))))))))))..........-.. ( -31.70) >DroAna_CAF1 10578 107 - 1 UUUCUUUUGAGUGCGGAAACUUUUAGUUUCUCU-----CU---ACUU----CAGCCCGAGAAGAAUAGA-AAUAAAUUGCUGUAAAGGAAAUGCAAAUUGUUUUCCAAAUUAUGCAGCCC (((((((((...((((((((.....)))))).(-----((---((((----(.......))))..))))-........))..)))))))))((((((((........)))).)))).... ( -21.50) >consensus UUUCUUUGGAGUGCGGAAACUUUUAGUUUCCCUGCUCUCUGCCACUUUUUGCCGCUCCGAAGGAAUGGAAAAUAAAUUGCCCUCGAGGAAAUGCAAAUUGUUUUUCAAAUUAUACAU_CC (((((((((.(((.((((((.....))))))..((.....))..........))).)))))))))((((((((((.((((............)))).))))))))))............. (-24.28 = -24.23 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:38 2006