Locus 5080

Sequence ID 3L_DroMel_CAF1
Location 13,937,710 – 13,937,826
Length 116
Max. P 0.805557
window8048

overview

Window 8

Location 13,937,710 – 13,937,826
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 91.70
Mean single sequence MFE -21.32
Consensus MFE -17.10
Energy contribution -16.78
Covariance contribution -0.32
Combinations/Pair 1.14
Mean z-score -1.67
Structure conservation index 0.80
SVM decision value 0.63
SVM RNA-class probability 0.805557
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13937710 116 + 23771897
GAUCAUACUUGUAAUUUCAUGAGGUGCACAGUAUAUUACAAUUCCCUUUGUACCCCAAUGAAAAUUAUAAACUUCGGCUCUGCUGAUGUGCUAUAUACAUACAUAUUAUAUAGAUU
........((((((((((((..((((((.((..............)).))))))...))).)))))))))((.(((((...))))).)).(((((((.........)))))))... ( -22.84)
>DroSec_CAF1 45845 116 + 1
GAUCAUACUUGUAAUUUCAUGAGGUGCACAGUAUAUUACAAUUCCCUUUGUAUCCUAAUGAAAAUUAUAAACUUCGGCUCUGCUGAUGUGCUAUAUACAUACAUAUUAUAUAGAUU
........((((((((((((.(((((((.((..............)).)))).))).))).)))))))))((.(((((...))))).)).(((((((.........)))))))... ( -21.34)
>DroSim_CAF1 46536 116 + 1
GAUCAUACUUGUAAUUUCAUGAGGUGCACAGUAUAUUACAAUUCCCUUUGUAUCCUAAUGAAAAUUAUAAACUUCGGCUCUGCUGAUGUGCUAUAUACAUACAUAUUAUAUAGAUU
........((((((((((((.(((((((.((..............)).)))).))).))).)))))))))((.(((((...))))).)).(((((((.........)))))))... ( -21.34)
>DroEre_CAF1 45178 112 + 1
GAUCACACUUGUAAUUUCAUGAGGUGCACAGUAUAUUACUAUACCCUUUGUAUCCUAAAGAAAAUUAUAAGCUUCAGCUCUGCUGAUGUGCUAUAUACAUAAA----AAAUACAUU
...(((((((((((((((...(((((((.((..(((....)))..)).)))).)))...).))))))))))..(((((...))))))))).............----......... ( -22.40)
>DroYak_CAF1 47490 112 + 1
UAUCAUUCUUGUAAUUUCAUGAGGUGCACAGUAUAUAACUAUACCUUUUGUAUCCUAAAGAAAAUUAUAAACUUCAGCUCUGCUGAUGUGCUAUAUACAUAAA----AUAUACAUU
.........((((.((((...(((((((..(((((....)))))....)))).)))...))))..((((.((.(((((...))))).))..))))))))....----......... ( -18.70)
>consensus
GAUCAUACUUGUAAUUUCAUGAGGUGCACAGUAUAUUACAAUUCCCUUUGUAUCCUAAUGAAAAUUAUAAACUUCGGCUCUGCUGAUGUGCUAUAUACAUACAUAUUAUAUAGAUU
.........((((.((((((..((((((.((..............)).))))))...))))))..((((.((.(((((...))))).))..))))))))................. (-17.10 = -16.78 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:28 2006