Locus 5078

Sequence ID 3L_DroMel_CAF1
Location 13,932,844 – 13,932,963
Length 119
Max. P 0.645938
window8046

overview

Window 6

Location 13,932,844 – 13,932,963
Length 119
Sequences 6
Columns 119
Reading direction reverse
Mean pairwise identity 73.22
Mean single sequence MFE -30.55
Consensus MFE -14.88
Energy contribution -16.25
Covariance contribution 1.37
Combinations/Pair 1.38
Mean z-score -1.72
Structure conservation index 0.49
SVM decision value 0.23
SVM RNA-class probability 0.645938
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13932844 119 - 23771897
AAGUGUAGUAUGAACUUAUGAAGUCCUGGCAAAACUUUAAACCAUUAGUCCCACCGCCUUGAAGUUGUUGAGACUUCGGAAUAUUAUCAACAGCUUCUGUACUUUCCCCCAACUGCACA
..(((((((.((.......((((((..((((..(((((((..................)))))))))))..))))))((((........((((...))))...))))..))))))))). ( -26.97)
>DroSec_CAF1 40994 119 - 1
UAGUGUAGUAUAAGCUUAUGAAGCGUUGGCAAAACUCUAAACCAUUAGUUCCACCGCCUUGAAGUUGUUGAAACUUCGGAAGAUUAUCAACAGCUUCUGUACUUUCCCCCAACUGCACG
..(((((((.............(((.(((...((((..........))))))).)))...(((((((((((....((....))...)))))))))))..............))))))). ( -34.00)
>DroSim_CAF1 41328 119 - 1
UACUGUAGUAUAAGCUUAUGAAGCGUUGGCAAAACUCUAUACCAUUGGUUCCACCGCCUUGAAGUUGUUGAAACUUCGGAAGAUUAUCAACAGCUUCUGUACUUUCCCCCAACUGCACG
...((((((.............(((.(((...((((..........))))))).)))...(((((((((((....((....))...)))))))))))..............)))))).. ( -30.00)
>DroEre_CAF1 40327 119 - 1
UAUUGUAGUACGAACUUAUGAAGCGUUGGCAAAACAUUAAGCCAUUAGUGCCACCGCUUUGAAGUCGUUCAAACUUCGGAAGAUUAUCAACAACUUUUGUAUUUUCCUCAGACUGCACG
...((((((((((.(((.(((((((.(((((.....((((....))))))))).)))))))))))))).....((..(((((((...(((......))).)))))))..)))))))).. ( -31.70)
>DroYak_CAF1 42666 119 - 1
UUUUGUAGUACGAACUUAUGAAGCGUUGGCAAAACAUUAAACCAUUAGUCCCACCGCUUUGCAGUCGUUGAAACUUCGGAAGCUCAUCAACCACUAUUGUAUUUUCCUCUGAAUGUACG
.......(((((.......((((((.(((......(((((....))))).))).))))))..(((.(((((.....(....)....))))).)))..................))))). ( -20.60)
>DroAna_CAF1 43342 110 - 1
AGCUGUAGUAGGCAGCUACAAAGGAGAGGCAAAAGUCCAUUCUGGAGGUCCCUGCACUCUGCAGUCUCUGGGGACUGGG--------CAACGGACAUU-UCUUAGCCUUGGGCAGCACA
.(((((...((((.(((.(......).)))....((((.(((..((((...((((.....))))))))..)))....(.--------...)))))...-.....))))...)))))... ( -40.00)
>consensus
UACUGUAGUAUGAACUUAUGAAGCGUUGGCAAAACUCUAAACCAUUAGUCCCACCGCCUUGAAGUCGUUGAAACUUCGGAAGAUUAUCAACAGCUUCUGUACUUUCCCCCAACUGCACG
...((((((.............(((.(((.......((((....))))..))).)))...(((((((((((....((....))...)))))))))))..............)))))).. (-14.88 = -16.25 +   1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:26 2006