| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 13,925,515 – 13,925,607 |
| Length | 92 |
| Max. P | 0.626060 |
| Location | 13,925,515 – 13,925,607 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 75.82 |
| Mean single sequence MFE | -17.29 |
| Consensus MFE | -10.78 |
| Energy contribution | -11.03 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.626060 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 13925515 92 - 23771897 --AGCUUGCAUUAAAUCUUCAUUGAUGAGUCCAUGCUAUUAAAUAUUUAUAGAAUGGAGUUUAAUCUU---UGCUCACGAUAGAGAAAAAAGAAAGU --.((((.((((((.......))))))..(((((.((((.........)))).)))))......((((---(.(((......)))...))))))))) ( -16.40) >DroSec_CAF1 33716 87 - 1 --AGUUUGCA-----UCUUCAUUGAUAAGUCCAUGCUAUUAAAUAUUUAUAGAAUGGAGUUUAAUCUU---UGCUCACGAUAGAGUAAAAAGAAAGU --........-----((((....(((((.(((((.((((.........)))).))))).))..)))((---(((((......))))))))))).... ( -16.50) >DroSim_CAF1 33919 92 - 1 --AGCUUGCAUUAAAUCUUCAUUGAUGAGUCCAUGCUAUUAAAUAUUUAUAGAAUGGAGUUUAAUCUU---UGCUCACGAUAGAGAAAAAAGAAAGU --.((((.((((((.......))))))..(((((.((((.........)))).)))))......((((---(.(((......)))...))))))))) ( -16.40) >DroYak_CAF1 35200 92 - 1 --AGCUUGCAUUAAGUCUUCAUUGAUGAGUCGAUGUUAUAAAAUAUUUAUAGAAUGGAGUUUAAUCUU---UGCUCACGAUAGAGCAAAAAGAAAGU --.((((.(((((((.(((((((.((((((..............))))))..))))))))))))).((---(((((......)))))))..).)))) ( -18.44) >DroAna_CAF1 36665 94 - 1 GUAGUUUAUUUUUUAUUAUCUUUGGCGAAUCCAAGUCCAUAAAUAUUUUUGGUUUGGAGUUUAAUCUU---UGCUCCAAAUGGAGCAAAAAGAAAGU ..................(((((......((((((.(((..........))))))))).........(---((((((....)))))))))))).... ( -22.30) >DroPer_CAF1 33868 83 - 1 -------------AGUCUGUUGU-GCAGAUCCAAGUUCAUAAAUAUUGAUAGAAUGGAGUUUAAUCUGGACUGCAAUAAAUAAAGCAAAAAGAAAGU -------------.((.((((.(-((((.((((..((......((((.....))))......))..)))))))))...))))..))........... ( -13.70) >consensus __AGCUUGCAUUAAAUCUUCAUUGAUGAGUCCAUGCUAUUAAAUAUUUAUAGAAUGGAGUUUAAUCUU___UGCUCACGAUAGAGCAAAAAGAAAGU ..........................((.(((((.((((.........)))).))))).))...((((...(((((......)))))..)))).... (-10.78 = -11.03 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:21 2006