Locus 5061

Sequence ID 3L_DroMel_CAF1
Location 13,868,150 – 13,868,244
Length 94
Max. P 0.993823
window8023

overview

Window 3

Location 13,868,150 – 13,868,244
Length 94
Sequences 6
Columns 111
Reading direction forward
Mean pairwise identity 88.21
Mean single sequence MFE -23.28
Consensus MFE -21.42
Energy contribution -21.92
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.44
Structure conservation index 0.92
SVM decision value 2.43
SVM RNA-class probability 0.993823
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13868150 94 + 23771897
-----------------ACAAAAAAAAAUUGUUGAAGGAGGAAAAUCGUUUCACACAUUACACACAACAACACGGAAGAGGCAGAAUUGCCCUGUCUCUUUCCUUCUUUCG
-----------------................((((((((......((.....)).................(((((((((((.......))))))))))))))))))). ( -23.50)
>DroSec_CAF1 29449 93 + 1
-----------------CCAAA-AAAAAUUGUUGAAGGAGGAAAAUCGUUUCACACAUUACACACAACAACACGGAAGAGGCAGAAUUGCCCUGUCUCUUUCCUUCUUUCG
-----------------.....-..........((((((((......((.....)).................(((((((((((.......))))))))))))))))))). ( -23.50)
>DroSim_CAF1 20594 93 + 1
-----------------CCAAA-AAAAAUUGUUGAAGGAGGAAAAUCGUUUCACACAUUACACACAACAACACGGAAGAGGCAGAAUUGCCCUGUCUCUUUCCUUCUUUCG
-----------------.....-..........((((((((......((.....)).................(((((((((((.......))))))))))))))))))). ( -23.50)
>DroEre_CAF1 36347 92 + 1
-----------------CCAAA--AAAAUUGUUGAAGGAGGAAAAUCGUUUCACACAUUACACACAACAACACGGAAGAGGCAGAGUUGCCCUGUCUCUUUCCUUCUUUCG
-----------------.....--.........((((((((......((.....)).................(((((((((((.......))))))))))))))))))). ( -23.50)
>DroYak_CAF1 32051 92 + 1
-----------------CCAAA--AAAAUUGUUGAAGGAGGAAAAUCGUUUCACACAUUACACACAACAACACGGAAGAGGCAGAGUUGCCCUGUCUCUUUCCUUCUUUCG
-----------------.....--.........((((((((......((.....)).................(((((((((((.......))))))))))))))))))). ( -23.50)
>DroAna_CAF1 29587 110 + 1
CCGAAAAAAAAAACAAGCAAAA-GGACAUCAUCGAAGGAGGAAAAUCGUUUCGCACAUUACACACAACAACAGGGAAGAGCCAGAGUUGUCCUGUCUCUCUCCUUCUUGCG
................((((..-.((.....))(((((((((((....)))).........(((..(((((..((.....))...)))))..)))....))))))))))). ( -22.20)
>consensus
_________________CCAAA_AAAAAUUGUUGAAGGAGGAAAAUCGUUUCACACAUUACACACAACAACACGGAAGAGGCAGAAUUGCCCUGUCUCUUUCCUUCUUUCG
.................................((((((((......((.....)).................(((((((((((.......))))))))))))))))))). (-21.42 = -21.92 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:41:03 2006