Locus 5056

Sequence ID 3L_DroMel_CAF1
Location 13,851,669 – 13,851,780
Length 111
Max. P 0.998710
window8017

overview

Window 7

Location 13,851,669 – 13,851,780
Length 111
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 91.83
Mean single sequence MFE -38.27
Consensus MFE -35.03
Energy contribution -35.95
Covariance contribution 0.92
Combinations/Pair 1.15
Mean z-score -2.61
Structure conservation index 0.92
SVM decision value 3.20
SVM RNA-class probability 0.998710
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13851669 111 - 23771897
GGUCAAAUUGCGACCAUGGUGGAGGAGAAGGCGCGCUCCCUGCUGCCCCGUCAUCACUUUGCAAGCCUUUCCUACUAUAUUGCCGAAUAUAGUGCGAAAGCAAUGACCAUA
(((((..((((((...(((((..((....((((.((.....))))))))..)))))..))))))((.((((.(((((((((....))))))))).))))))..)))))... ( -40.80)
>DroVir_CAF1 23303 111 - 1
GGUCAAAUCACGACCAUGGUGGAGGAGAAGGCGCGCUCGCUGCUGCCACGUCAUCAUUUUGCAAGUCUUUCGUAUUAUAUUGCCGAAUAUAGUGUGAAAGCAAUGACCAUA
(((((......(((..(((..((((((........))).)).)..))).)))............(.(((((((((((((((....))))))))))))))))..)))))... ( -33.20)
>DroPse_CAF1 16063 111 - 1
GGUCAGAUUGCGACCAUGGUGGAGGAGAAGGCCCGCUCUCUGCUGCCCCGUCAUCACUUUGCAAGCCUCUCCUACUAUAUUGCAGAGUAUAGUGGGAAAGCAAUGACCAUA
(((((..((((((...(((((..((....(((..((.....)).)))))..)))))..))))))((...((((((((((((....))))))))))))..))..)))))... ( -42.30)
>DroWil_CAF1 23429 111 - 1
GGUCAAAUUGCGACCAUGGUUGAGGAGAAGGCACGCUCUCUGCUGCCACGACAUCAUUUUGCAAGCCUUUCAUAUUAUAUUGCCGAAUAUAGUGCGAAAGCAAUGACCAUA
(((((..((((((.....((((.((....((((.......)))).)).))))......))))))((.((((.(((((((((....))))))))).))))))..)))))... ( -33.10)
>DroMoj_CAF1 18260 111 - 1
GGUCAGAUUGCGACCAUGGUGGAGGAGAAGGCGCGCUCGCUGCUGCCACGACAUCAUUUUGCAAGUCUUUCAUAUUAUAUAGCCGAAUAUAGUGUGAAAGCAAUGACCAUA
(((((..((((((..((((((..(.....((((.((.....)))))).)..)))))).))))))(.((((((((((((((......)))))))))))))))..)))))... ( -41.10)
>DroAna_CAF1 13901 111 - 1
GGUCAAAUUGCGACCAUGGUGGAGGAGAAGGCUCGCUCGCUGCUGCCACGUCAUCACUUUGCAAGCCUUUCGUACUACAUUGCCGAAUAUAGUGCGAAAGCAAUGACCAUA
(((((..((((((...(((((((((((....))).)))((....)).....)))))..))))))((.((((((((((.(((....))).))))))))))))..)))))... ( -39.10)
>consensus
GGUCAAAUUGCGACCAUGGUGGAGGAGAAGGCGCGCUCGCUGCUGCCACGUCAUCACUUUGCAAGCCUUUCAUACUAUAUUGCCGAAUAUAGUGCGAAAGCAAUGACCAUA
(((((..((((((...(((((..(.....((((.((.....)))))).)..)))))..))))))(.(((((((((((((((....))))))))))))))))..)))))... (-35.03 = -35.95 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:57 2006