Locus 5045

Sequence ID 3L_DroMel_CAF1
Location 13,808,735 – 13,808,847
Length 112
Max. P 0.521766
window8003

overview

Window 3

Location 13,808,735 – 13,808,847
Length 112
Sequences 4
Columns 116
Reading direction reverse
Mean pairwise identity 91.96
Mean single sequence MFE -26.20
Consensus MFE -21.96
Energy contribution -22.52
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -1.42
Structure conservation index 0.84
SVM decision value -0.02
SVM RNA-class probability 0.521766
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13808735 112 - 23771897
UCAGAGAAGCGAAAGUAAGAGACCACAGAGAAUUCGCUCGUAACUCUCUACAAACCCCAUGAUGGG----UAACUCUCAUUGAAACUUUUCAAGCGUCGCGCUUAGCUUAGCAAAA
...((((.((....)).(((((.....(((......))).....)))))....((((......)))----)...)))).(((((....)))))((...((.....))...)).... ( -25.30)
>DroSec_CAF1 2027 112 - 1
UCAGAGAAGCGAAAGUAAGAGACCACAGAGAAUUCGCUCGUAACUCUCUACAAACCCCAUGAUGGG----UAACUCUCAUUGAAACUUUUCAAGCGUCGCGCUUAGCUUAGCAAAA
...((((.((....)).(((((.....(((......))).....)))))....((((......)))----)...)))).(((((....)))))((...((.....))...)).... ( -25.30)
>DroEre_CAF1 6580 111 - 1
UCAGAGAAGCGAAAGUAAGAGACUACAGAGAACUCGCUCGUAACUCUCUACAAACCCCAUGAUAGGUAUGUAACUCUCAUUGAAACUUUUCAAGCGUUUCGCU-----UAGCAAAG
...(..((((((((((..((((.(((.(((......))))))......((((.(((........))).))))..)))).(((((....))))))).)))))))-----)..).... ( -25.90)
>DroYak_CAF1 6467 112 - 1
GCAGAGAAGCGAAAGUAAGAGACCACAGAGAAUUCGCUCGUAACUCUCUAUAAACCCCUUGAUGGG----UAACUCUCAUUGAAACUUUUCAAGCGUCUCGCUUAGCUUAGCAAAA
...((((.((((.(((.(((((.....(((......))).....)))))....((((......)))----).))).)).(((((....))))))).))))(((......))).... ( -28.30)
>consensus
UCAGAGAAGCGAAAGUAAGAGACCACAGAGAAUUCGCUCGUAACUCUCUACAAACCCCAUGAUGGG____UAACUCUCAUUGAAACUUUUCAAGCGUCGCGCUUAGCUUAGCAAAA
...((((.((((.(((.(((((.....(((......))).....)))))......(((.....)))......))).)).(((((....))))))).))))(((......))).... (-21.96 = -22.52 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:40:44 2006