Locus 5021

Sequence ID 3L_DroMel_CAF1
Location 13,773,077 – 13,773,173
Length 96
Max. P 0.842315
window7942

overview

Window 2

Location 13,773,077 – 13,773,173
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 94.17
Mean single sequence MFE -19.72
Consensus MFE -15.69
Energy contribution -15.33
Covariance contribution -0.36
Combinations/Pair 1.16
Mean z-score -1.87
Structure conservation index 0.80
SVM decision value 0.76
SVM RNA-class probability 0.842315
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13773077 96 - 23771897
CCCGAAAUGAACACUUCGCCAUUAAAUGGGUGAGGAGUAUCCUUUUUGUAUCACUUGGCUCUGGAUUUUCGCCGCUUUUCUCUCUUCAUUUUCUUC
...(((((((((.(((((((........))))))).))..................(((...........)))............))))))).... ( -18.10)
>DroSec_CAF1 19772 96 - 1
CCCGAAAUGAACACUUCGCCAUUAAAUGGGUGAGGAGUAUCCUUUUUGUAUCACUUGCCUCUGGAUUUUCGCAGCUUUUCUCUCUUCAUUUUCUUC
...(((((((((.(((((((........))))))).))((((.....(((.....)))....))))...................))))))).... ( -18.30)
>DroSim_CAF1 15113 96 - 1
CCCGAAAUGAACACUUCGCCAUUAAAUGGGUGAGGAGUAUCCUUUUUGUAUCACUUGCCUCUGGAUUUUCGCCGCUUUUCUCUCUUCAUUUUCUUC
...(((((((((.(((((((........))))))).))((((.....(((.....)))....))))...................))))))).... ( -18.30)
>DroEre_CAF1 19147 96 - 1
CCCAAAGUGAACACCUCGCCUUUAAAUGGGUGAGGAGAAUCCUUUUUGUAUCACUUGGCUCCGGAUUUUCUCCGCUUUUCUCUCUUCAUUUUCUUC
.((((.((((((.((((((((......))))))))((((....)))))).))))))))...((((.....))))...................... ( -24.90)
>DroYak_CAF1 17782 96 - 1
UCCAAAAUGAACACUUCGCCUUUAAAUGGCUGAGGAGUAUCCUUUUUGUAUCACUUGGCUCUGGAUUUUCUCCGCUUUUCCCUCUUCAUUUUCUUC
...((((((((......(((.......)))...((((.((((.....((........))...))))...))))...........)))))))).... ( -19.00)
>consensus
CCCGAAAUGAACACUUCGCCAUUAAAUGGGUGAGGAGUAUCCUUUUUGUAUCACUUGGCUCUGGAUUUUCGCCGCUUUUCUCUCUUCAUUUUCUUC
...((((((((..(((((((........)))))))...((((....................))))..................)))))))).... (-15.69 = -15.33 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:46 2006