Locus 5019

Sequence ID 3L_DroMel_CAF1
Location 13,770,558 – 13,770,673
Length 115
Max. P 0.870244
window7940

overview

Window 0

Location 13,770,558 – 13,770,673
Length 115
Sequences 5
Columns 116
Reading direction reverse
Mean pairwise identity 94.90
Mean single sequence MFE -31.78
Consensus MFE -27.94
Energy contribution -28.70
Covariance contribution 0.76
Combinations/Pair 1.10
Mean z-score -1.46
Structure conservation index 0.88
SVM decision value 0.87
SVM RNA-class probability 0.870244
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13770558 115 - 23771897
CAUGUGAGGAAACAUUUGGCGCGCAAGUAAAUGUGCAUGUGGGUGAGAUGGUUU-UUGCCGUUUCUAGACUGCUCUUUGUUUGAGUUGUGUUUUAAUUUCCAUAUUACGUGCUGGC
((((((((....).......(((((......))))).((((((.((((((((..-..)))))))).((((.((((.......))))...)))).....)))))))))))))..... ( -33.10)
>DroSec_CAF1 17247 115 - 1
CAUGUGAGGAAACAUUUGGCGCGCAAGUAAAUGUGCAUGUGGGUGAGAUGGUUU-UUGCCGUUUCUAGAGUGCUCUUUGUUUGAGUUGUGUUUUAAUUUCCAUAUUACGUGCUGGC
((((((((....).......(((((......))))).((((((.((((((((..-..))))))))(((((..(.(((.....)))..)..)))))...)))))))))))))..... ( -33.20)
>DroSim_CAF1 12580 115 - 1
CAUGUGAGGAAACAUUUGGCGCGCAAGUAAAUGUGCAUGUGGGUGAGAUGGUUU-UUGCCGUUUCUAGACUGCUCUUUGUUUGAGUUGUGUUUUAAUUUCCAUAUUACGUGCUGGC
((((((((....).......(((((......))))).((((((.((((((((..-..)))))))).((((.((((.......))))...)))).....)))))))))))))..... ( -33.10)
>DroEre_CAF1 16676 116 - 1
CAUGUGAGGAAACAUUUGCUGCGCAAGUAAAUGUGCAGGUGGGUGAGACGAUUUUUUUGCGUUUCUAGACUGCUCUUUGUUUGAGUUGUGUUUUAAUUUCCAUAUUACGUGCUGGC
((((((((....).....(((((((......)))))))(((((.((((((.........)))))).((((.((((.......))))...)))).....))))).)))))))..... ( -31.70)
>DroYak_CAF1 14565 115 - 1
CAUGUGAGGAAACAUUUACUACGCAAGUAAAUGUGCAGGUGGGUGAGAUGUUUUUUUGCCGUUUCUAGACUGCUCUUUGUUUGAGUUGUGUUUUAAUUUCCAUAUUACGUGCUG-C
((((((((((((((((((((.....)))))))))..(((..((..(((.....)))..))...)))((((.((((.......))))...))))....))))...)))))))...-. ( -27.80)
>consensus
CAUGUGAGGAAACAUUUGGCGCGCAAGUAAAUGUGCAUGUGGGUGAGAUGGUUU_UUGCCGUUUCUAGACUGCUCUUUGUUUGAGUUGUGUUUUAAUUUCCAUAUUACGUGCUGGC
((((((((((((...((((.((((((.((((((.((((......((((((((.....))))))))....))))....))))))..)))))).)))))))))...)))))))..... (-27.94 = -28.70 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:44 2006