Locus 5017

Sequence ID 3L_DroMel_CAF1
Location 13,769,302 – 13,769,400
Length 98
Max. P 0.816166
window7938

overview

Window 8

Location 13,769,302 – 13,769,400
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 99.18
Mean single sequence MFE -16.68
Consensus MFE -16.24
Energy contribution -16.08
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.40
Structure conservation index 0.97
SVM decision value 0.66
SVM RNA-class probability 0.816166
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13769302 98 + 23771897
CUUACCGCACUCUGGUCUGUGUACUUUUGUUCAAAUAUUCAUUGCAAAUUCCAAUUUAAUUUUCGCUUAAAUUGGCAAUACCAACAGCGAAAUCUGCA
......(((...(((....((((....(((....))).....))))....))).......(((((((....((((.....)))).)))))))..))). ( -16.20)
>DroSec_CAF1 15846 98 + 1
CUUACCGCACUCUGGUCUGUGUACUUUUGUUCAAAUAUUCAUUGCAAAUUCCAAUUUAAUUUUCGCUUAAAUUGGCAAUACCAAUAGCGAAAUCUGCA
......(((...(((....((((....(((....))).....))))....))).......(((((((...(((((.....))))))))))))..))). ( -17.80)
>DroSim_CAF1 11121 98 + 1
CUUACCGCACUCUGGUCUGUGUACUUUUGUUCAAAUAUUCAUUGCAAAUUCCAAUUUAAUUUUCGCUUAAAUUGGCAAUACCAACAGCGAAAUCUGCA
......(((...(((....((((....(((....))).....))))....))).......(((((((....((((.....)))).)))))))..))). ( -16.20)
>DroEre_CAF1 15272 98 + 1
CUUACCGCACUCUGGUCUGUGUACUUUUGUUCAAAUAUUCAUUGCAAAUUCCAAUUUAAUUUUCGCUUAAAUUGGCAAUACCAACAGCGAAAUCUGCA
......(((...(((....((((....(((....))).....))))....))).......(((((((....((((.....)))).)))))))..))). ( -16.20)
>DroYak_CAF1 13269 98 + 1
CUUACCGCACUCUGGUCUGUGUGCUUUUGUUCAAAUAUUCAUUGCAAAUUCCAAUUUAAUUUUCGCUUAAAUUGGCAAUACCAACAGCGAAAUCUGCA
......(((...(((...((.(((...((..........))..))).)).))).......(((((((....((((.....)))).)))))))..))). ( -17.00)
>consensus
CUUACCGCACUCUGGUCUGUGUACUUUUGUUCAAAUAUUCAUUGCAAAUUCCAAUUUAAUUUUCGCUUAAAUUGGCAAUACCAACAGCGAAAUCUGCA
......(((...(((....((((....(((....))).....))))....))).......(((((((....((((.....)))).)))))))..))). (-16.24 = -16.08 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:42 2006