Locus 5002

Sequence ID 3L_DroMel_CAF1
Location 13,758,626 – 13,758,717
Length 91
Max. P 0.860982
window7906

overview

Window 6

Location 13,758,626 – 13,758,717
Length 91
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 93.90
Mean single sequence MFE -13.83
Consensus MFE -13.16
Energy contribution -13.00
Covariance contribution -0.16
Combinations/Pair 1.07
Mean z-score -1.25
Structure conservation index 0.95
SVM decision value 0.83
SVM RNA-class probability 0.860982
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 13758626 91 - 23771897
GCCGCCACACUAUGUGAAUUGCUCAUUUUAAUUACUGGCAGCUGUUAUCCCCCACAGCACUUUCUGCUCCCCCAUCGCCCCAU-UCGUCCUU
((.((((......((((.....)))).........)))).(((((........))))).......))................-........ ( -13.46)
>DroSec_CAF1 5190 92 - 1
GCCGCCACACUAUGUGAAUUGCUCAUGUUAAUUACUGGCAGCUGUUAUCCCCCACAGCACUUUCAGCUCCCCCAUUGCCCCAUUUCGUCCUU
((.((((....((((((.....)))))).......)))).(((((........))))).......))......................... ( -15.10)
>DroSim_CAF1 1325 92 - 1
GCCGCCACACUAUGUGAAUUGCUCAUUUUAAUUACUGGCAGCUGUUAUCCCCCACAGCACUUUCAGCUCCCCCAUUGCCCCAUUUCGUCCUU
((.((((......((((.....)))).........)))).(((((........))))).......))......................... ( -13.66)
>DroEre_CAF1 4421 90 - 1
GCCGCCACACUAUGUGAAUUGCUCAUUUUAAUUACUGGCAGCUGUUAGCCCCCACAGCACUUUCUGCACUCCUAUC-CGCCA-UUCGUCCUU
((.((((......((((.....)))).........)))).(((((........))))).......)).........-.....-......... ( -13.96)
>DroYak_CAF1 1421 90 - 1
GCCGCCACACUAUGUGAAUUGCUCAUUUUAAUUACUGGCAGCUGUUAUCCCCCACAGCACUUUCUGUUCCCCCAUC-CCCCA-UUCGUCCUU
((((.........((((.....)))).........)))).(((((........)))))..................-.....-......... ( -12.97)
>consensus
GCCGCCACACUAUGUGAAUUGCUCAUUUUAAUUACUGGCAGCUGUUAUCCCCCACAGCACUUUCUGCUCCCCCAUCGCCCCAUUUCGUCCUU
((.((((......((((.....)))).........)))).(((((........))))).......))......................... (-13.16 = -13.00 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:39:12 2006